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fix: remove trailing whitespace in anchor tags, wrap matched terms with links, and update GitHub Pages trigger branch #3

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Merged
SMutyala18 merged 1 commit into from
Jun 4, 2025
Merged

fix: remove trailing whitespace in anchor tags, wrap matched terms with links, and update GitHub Pages trigger branch #3

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4 changes: 2 additions & 2 deletions .github/workflows/deploy.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,10 +3,10 @@ name: Deploy MkDocs to GitHub Pages
on:
push:
branches:
- develop-mkdocs # Trigger this workflow on push to the develop branch
- main
pull_request:
branches:
- develop-mkdocs # Also trigger on pull requests to the develop branch
- main

jobs:
deploy:
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8 changes: 4 additions & 4 deletions hooks.py
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Expand Up @@ -33,7 +33,7 @@ def get_ontology_annotations(config, ontology_id, text):

response.raise_for_status()
response_data = response.json()
print(f"Response from {ontology_id} ontology: {response_data}")
# print(f"Response from {ontology_id} ontology: {response_data}")

if 'matches' in response_data and isinstance(response_data['matches'], list):
text_with_spans = wrap_terms_in_span(text, response_data['matches'])
Expand All @@ -49,7 +49,7 @@ def get_ontology_annotations(config, ontology_id, text):

def wrap_terms_in_span(text, matches):

cleaner_matches = [{'matched_term': m['matched_term'], 'start': m['start'], 'end': m['end'], 'iri': m['iri']} for m in matches]
cleaner_matches = [{'term': m['token'],'matched_term': m['matched_term'], 'start': m['start'], 'end': m['end'], 'iri': m['iri']} for m in matches]
sorted_matches = sorted(cleaner_matches, key=lambda m: (-len(m['matched_term']), -m['start']))

modified_positions = set()
Expand Down Expand Up @@ -80,8 +80,8 @@ def wrap_terms_in_span(text, matches):

for match in modifications:
result += text[last_end:match['start']]
result += f"<a href={match['iri']} style='border-bottom: 1px dotted #666; text-decoration: none;'>{match['matched_term']}</a> "
last_end = match['end'] + 1
result += f"<a href={match['iri']} style='border-bottom: 1px dotted #666; text-decoration: none;'>{match['term']}</a>"
last_end = match['end']

result += text[last_end:]

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