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@NICHD-BSPC

NIH/NICHD Bioinformatics and Scientific Programming Core

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  1. termseq-peaks termseq-peaks Public

    Peak-calling for term-seq data in bacteria

    Python 6

  2. r-setup r-setup Public

    Documentation and config files for setting up R

    Vim Script 3

  3. geo_prepper geo_prepper Public

    Tool to help prepare data for GEO submission

    Python 3 1

  4. documentation-template documentation-template Public

    Repository demonstrating how to deploy Sphinx documentation to GitHub Pages

    Python 3

  5. effort-log effort-log Public

    Dockerized Flask web app for lightweight project tracking

    Python 3

  6. carnation carnation Public

    Interactive shiny app for deeply exploring bulk RNA-Seq data

    R 2 1

Repositories

Showing 10 of 26 repositories
  • aksenova-2025 Public
    NICHD-BSPC/aksenova-2025’s past year of commit activity
    R 0 0 0 0 Updated Mar 20, 2026
  • cascadeR Public

    Interactive shiny dashboard for comprehensive single-cell data exploration

    NICHD-BSPC/cascadeR’s past year of commit activity
    R 0 0 0 1 Updated Mar 18, 2026
  • carnation Public

    Interactive shiny app for deeply exploring bulk RNA-Seq data

    NICHD-BSPC/carnation’s past year of commit activity
    R 2 1 0 1 Updated Mar 17, 2026
  • lee-2026 Public

    Workflows and code to reproduce results from Lee 2026

    NICHD-BSPC/lee-2026’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 21, 2026
  • AnalyzeOlink Public

    R package, RMarkdown files, and Snakemake workflow for analyzing Olink proximal extension assay data

    NICHD-BSPC/AnalyzeOlink’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Dec 18, 2025
  • trip-wire-test-data Public

    Test data for the trip-wire workflow

    NICHD-BSPC/trip-wire-test-data’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 11, 2025
  • training Public

    Source code of https://nichd-bspc.github.io/training

    NICHD-BSPC/training’s past year of commit activity
    CSS 0 2 0 0 Updated Jul 4, 2025
  • bacteria-dash Public
    NICHD-BSPC/bacteria-dash’s past year of commit activity
    Python 0 0 0 0 Updated Jun 25, 2025
  • intro-rnaseq-hpc Public
    NICHD-BSPC/intro-rnaseq-hpc’s past year of commit activity
    HTML 0 0 5 0 Updated May 19, 2025
  • branched-docs-demo Public

    Example of building HTML docs hosted on github.io with subdirectories for selected branches

    NICHD-BSPC/branched-docs-demo’s past year of commit activity
    0 MIT 1 0 1 Updated Apr 16, 2025
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