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lines changed Original file line number Diff line number Diff line change @@ -302,7 +302,7 @@ MACS specific parameters.
302302``fasta `` field
303303^^^^^^^^^^^^^^^
304304
305- string. A path to the `` fasta `` reference genome used to map sequencing reads.
305+ string. A path to the FASTA reference genome used to map sequencing reads.
306306 Cell Ranger users can specify ``fasta/genome.fa `` in the reference directory
307307 that was used to run ``cellranger-atac count `` or ``cellranger-arc count ``.
308308
@@ -312,7 +312,7 @@ MACS specific parameters.
312312
313313 string, default ``"../reference/multiome.chromsizes" `` (Multiome) or
314314 ``"../reference/atac.chromsizes" `` (ATAC). A path to the ``.chromsizes ``
315- file created from the `` fasta `` reference genome.
315+ file created from the FASTA reference genome.
316316
317317Example:
318318
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