Change NeMo to new organization NVIDIA-NeMo.

[cspades]

Description

• Update NeMo repository URL.

Type of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Refactor
• Documentation update
• Other (please describe):

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Configure CI behavior by applying the relevant labels:

• SKIP_CI - Skip all continuous integration tests
• INCLUDE_NOTEBOOKS_TESTS - Execute notebook validation tests in pytest
• INCLUDE_SLOW_TESTS - Execute tests labelled as slow in pytest for extensive testing

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Usage

$ cye@605b786-lcedt:~/Workspace/bionemo-framework$ cat .gitmodules
[submodule "3rdparty/Megatron-LM"]
        path = 3rdparty/Megatron-LM
        url = https://github.com/NVIDIA/Megatron-LM.git
[submodule "3rdparty/NeMo"]
        path = 3rdparty/NeMo
        url = https://github.com/NVIDIA-NeMo/NeMo.git
$ rm -drf 3rdparty/NeMo
$ mkdir 3rdparty/NeMo
$ cye@605b786-lcedt:~/Workspace/bionemo-framework$ ls -lah 3rdparty/NeMo
total 8.0K
drwxr-xr-x 2 cye domain-users 4.0K Aug 28 13:49 .
drwxr-xr-x 4 cye domain-users 4.0K Aug 28 13:49 ..
$ cye@605b786-lcedt:~/Workspace/bionemo-framework$ git submodule update
Submodule path '3rdparty/NeMo': checked out '7ccb0d4c5544dbcc454930acb3a1fe29d9db5090'
$ cye@605b786-lcedt:~/Workspace/bionemo-framework$ ls -lah 3rdparty/NeMo
total 408K
drwxr-xr-x 13 cye domain-users 4.0K Aug 28 13:50 .
drwxr-xr-x  4 cye domain-users 4.0K Aug 28 13:49 ..
-rw-r--r--  1 cye domain-users 137K Aug 28 13:50 CHANGELOG.md
-rw-r--r--  1 cye domain-users 1.1K Aug 28 13:50 CITATION.cff
-rw-r--r--  1 cye domain-users  563 Aug 28 13:50 codecov.yml
-rw-r--r--  1 cye domain-users 4.3K Aug 28 13:50 CONTRIBUTING.md
-rw-r--r--  1 cye domain-users  840 Aug 28 13:50 .coveragerc
drwxr-xr-x  3 cye domain-users 4.0K Aug 28 13:50 docker
-rw-r--r--  1 cye domain-users  184 Aug 28 13:50 .dockerignore
drwxr-xr-x  3 cye domain-users 4.0K Aug 28 13:50 docs
drwxr-xr-x 14 cye domain-users 4.0K Aug 28 13:50 examples
drwxr-xr-x  3 cye domain-users 4.0K Aug 28 13:50 external
-rw-r--r--  1 cye domain-users  305 Aug 28 13:50 .flake8
-rw-r--r--  1 cye domain-users  305 Aug 28 13:50 .flake8.other
-rw-r--r--  1 cye domain-users  306 Aug 28 13:50 .flake8.speech
-rw-r--r--  1 cye domain-users   41 Aug 28 13:50 .git
drwxr-xr-x  6 cye domain-users 4.0K Aug 28 13:50 .github
-rw-r--r--  1 cye domain-users 2.6K Aug 28 13:50 .gitignore
-rw-r--r--  1 cye domain-users  12K Aug 28 13:50 LICENSE
-rw-r--r--  1 cye domain-users   70 Aug 28 13:50 MANIFEST.in
drwxr-xr-x  9 cye domain-users 4.0K Aug 28 13:50 nemo
-rw-r--r--  1 cye domain-users 7.6K Aug 28 13:50 nemo_dependencies.py
-rw-r--r--  1 cye domain-users 1.8K Aug 28 13:50 .pre-commit-config.yaml
-rw-r--r--  1 cye domain-users   85 Aug 28 13:50 .pylintrc
-rw-r--r--  1 cye domain-users  225 Aug 28 13:50 .pylintrc.other
-rw-r--r--  1 cye domain-users  115 Aug 28 13:50 .pylintrc.speech
-rw-r--r--  1 cye domain-users 5.3K Aug 28 13:50 pyproject.toml
-rw-r--r--  1 cye domain-users  32K Aug 28 13:50 README.md
-rw-r--r--  1 cye domain-users 1.2K Aug 28 13:50 .readthedocs.yml
drwxr-xr-x  2 cye domain-users 4.0K Aug 28 13:50 requirements
drwxr-xr-x 35 cye domain-users 4.0K Aug 28 13:50 scripts
-rw-r--r--  1 cye domain-users  73K Aug 28 13:50 .secrets.baseline
-rw-r--r--  1 cye domain-users 9.8K Aug 28 13:50 setup.py
drwxr-xr-x 14 cye domain-users 4.0K Aug 28 13:50 tests
drwxr-xr-x 11 cye domain-users 4.0K Aug 28 13:50 tools
drwxr-xr-x 12 cye domain-users 4.0K Aug 28 13:50 tutorials

Pre-submit Checklist

• I have tested these changes locally
• I have updated the documentation accordingly
• I have added/updated tests as needed
• All existing tests pass successfully

Summary by CodeRabbit

• Chores
  • Updated the source reference for a third-party component to its current official repository to ensure reliable fetching and future updates.
  • Improves maintainability for development environments without altering application behavior.
  • No changes to features, performance, or user interface; builds and runtime functionality remain unaffected.

[coderabbitai]

Walkthrough

Updated the Git submodule URL for NeMo in .gitmodules, switching the remote from github.com/NVIDIA/NeMo.git to github.com/NVIDIA-NeMo/NeMo.git. No other files or logic changed.

Changes

Cohort / File(s)	Summary of Changes
Repo configuration: Submodule URL update \.gitmodules	Changed NeMo submodule remote from https://github.com/NVIDIA/NeMo.git to https://github.com/NVIDIA-NeMo/NeMo.git; path remains 3rdparty/NeMo.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~2 minutes

Poem

A hop to a new NeMo stream I see,
Git trails shift with nimble glee.
Burrow paths stay just the same,
Only the upstream changed its name.
Thump-thump, commit set free—
Carrot-approved dependency! 🥕🐇

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✨ Finishing Touches

🧪 Generate unit tests

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch cye/fix-nemo-remote

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[coderabbitai]

Actionable comments posted: 1

📜 Review details

Configuration used: CodeRabbit UI

Review profile: CHILL

Plan: Pro

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📥 Commits

Reviewing files that changed from the base of the PR and between 7c18697 and 5a4536b.

📒 Files selected for processing (1)

• .gitmodules (1 hunks)

⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (1)

• GitHub Check: Analyze (rust)

🔇 Additional comments (1)

.gitmodules (1)

6-6: LGTM: NeMo submodule URL updated to the new org.

The remote now points to https://github.com/NVIDIA-NeMo/NeMo.git; path remains unchanged. Looks correct.

[codecov-commenter]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 80.69%. Comparing base (7c18697) to head (5a4536b).
⚠️ Report is 1 commits behind head on main.
✅ All tests successful. No failed tests found.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #1089   +/-   ##
=======================================
  Coverage   80.69%   80.69%           
=======================================
  Files         156      156           
  Lines       11060    11060           
=======================================
  Hits         8925     8925           
  Misses       2135     2135