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Add small section mentioning context extension#837

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jwilber merged 3 commits intomainfrom
jwilber/1121-document-evo2-context-extension
May 23, 2025
Merged

Add small section mentioning context extension#837
jwilber merged 3 commits intomainfrom
jwilber/1121-document-evo2-context-extension

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@jwilber jwilber commented Apr 21, 2025

Description

Add a small section to evo2's README detailing context extension.

Type of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Refactor
  • Documentation update
  • Other (please describe):

CI Pipeline Configuration

Configure CI behavior by applying the relevant labels:

Note

By default, the notebooks validation tests are skipped unless explicitly enabled.

Authorizing CI Runs

We use copy-pr-bot to manage authorization of CI
runs on NVIDIA's compute resources.

  • If a pull request is opened by a trusted user and contains only trusted changes, the pull request's code will
    automatically be copied to a pull-request/ prefixed branch in the source repository (e.g. pull-request/123)
  • If a pull request is opened by an untrusted user or contains untrusted changes, an NVIDIA org member must leave an
    /ok to test comment on the pull request to trigger CI. This will need to be done for each new commit.

Usage

To view the changes live in the documentation:

From the repository root:

# Build the Docker image
docker build -t nvcr.io/nvidian/cvai_bnmo_trng/bionemo2-docs -f docs/Dockerfile .

# Run the Docker container
docker run --rm -it -p 8000:8000 \
    -v ${PWD}/docs:/docs -v ${PWD}/sub-packages:/sub-packages \
    nvcr.io/nvidian/cvai_bnmo_trng/bionemo2-docs:latest

Pre-submit Checklist

  • I have tested these changes locally
  • I have updated the documentation accordingly
  • I have added/updated tests as needed
  • All existing tests pass successfully

Signed-off-by: Jared Wilber <jwilber@nvidia.com>
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copy-pr-bot bot commented Apr 21, 2025

This pull request requires additional validation before any workflows can run on NVIDIA's runners.

Pull request vetters can view their responsibilities here.

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I added some alternative text that I think may be a bit clearer. Go with whatever makes the most sense!

Signed-off-by: Jared Wilber <jwilber@nvidia.com>
@jwilber jwilber enabled auto-merge April 21, 2025 18:55
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jwilber commented May 23, 2025

/ok to merge eadbdb5

@jwilber jwilber requested a review from tshimko-nv as a code owner May 23, 2025 18:28
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jwilber commented May 23, 2025

/ok to test 1608011

@jwilber jwilber added this pull request to the merge queue May 23, 2025
Merged via the queue into main with commit 8bc5e40 May 23, 2025
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@jwilber jwilber deleted the jwilber/1121-document-evo2-context-extension branch May 23, 2025 19:49
camirr-nv pushed a commit that referenced this pull request Jun 26, 2025
### Description
Add a small section to evo2's README detailing context extension.

### Type of changes
<!-- Mark the relevant option with an [x] -->

- [ ]  Bug fix (non-breaking change which fixes an issue)
- [ ]  New feature (non-breaking change which adds functionality)
- [ ]  Refactor
- [x]  Documentation update
- [ ]  Other (please describe):

### CI Pipeline Configuration
Configure CI behavior by applying the relevant labels:

-
[SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci)
- Skip all continuous integration tests
-
[INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests)
- Execute notebook validation tests in pytest
-
[INCLUDE_SLOW_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_slow_tests)
- Execute tests labelled as slow in pytest for extensive testing

> [!NOTE]
> By default, the notebooks validation tests are skipped unless
explicitly enabled.

#### Authorizing CI Runs

We use
[copy-pr-bot](https://docs.gha-runners.nvidia.com/apps/copy-pr-bot/#automation)
to manage authorization of CI
runs on NVIDIA's compute resources.

* If a pull request is opened by a trusted user and contains only
trusted changes, the pull request's code will
automatically be copied to a pull-request/ prefixed branch in the source
repository (e.g. pull-request/123)
* If a pull request is opened by an untrusted user or contains untrusted
changes, an NVIDIA org member must leave an
`/ok to test` comment on the pull request to trigger CI. This will need
to be done for each new commit.

### Usage
<!--- How does a user interact with the changed code -->
To view the changes live in the documentation:

From the repository root:

```bash
# Build the Docker image
docker build -t nvcr.io/nvidian/cvai_bnmo_trng/bionemo2-docs -f docs/Dockerfile .

# Run the Docker container
docker run --rm -it -p 8000:8000 \
    -v ${PWD}/docs:/docs -v ${PWD}/sub-packages:/sub-packages \
    nvcr.io/nvidian/cvai_bnmo_trng/bionemo2-docs:latest
```

### Pre-submit Checklist
<!--- Ensure all items are completed before submitting -->

 - [x] I have tested these changes locally
 - [x] I have updated the documentation accordingly
 - [x] I have added/updated tests as needed
 - [x] All existing tests pass successfully

---------

Signed-off-by: Jared Wilber <jwilber@nvidia.com>
Signed-off-by: Ubuntu <camirr@nvidia.com>
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3 participants