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Replace the CouchDB package with IBM cloudant#482

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aanil merged 12 commits intoNationalGenomicsInfrastructure:masterfrom
aanil:server_status
Aug 11, 2025
Merged

Replace the CouchDB package with IBM cloudant#482
aanil merged 12 commits intoNationalGenomicsInfrastructure:masterfrom
aanil:server_status

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@aanil aanil commented Jul 17, 2025

To test on miarka, taca_ngi_pipeline will need to be updated as well.

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codecov bot commented Jul 17, 2025

Codecov Report

❌ Patch coverage is 8.84354% with 134 lines in your changes missing coverage. Please review.
✅ Project coverage is 26.07%. Comparing base (c2e3e6e) to head (bfee8cc).
⚠️ Report is 15 commits behind head on master.

Files with missing lines Patch % Lines
taca/utils/statusdb.py 14.28% 78 Missing ⚠️
taca/utils/bioinfo_tab.py 0.00% 28 Missing ⚠️
taca/utils/misc.py 0.00% 8 Missing ⚠️
taca/analysis/analysis.py 0.00% 5 Missing ⚠️
taca/server_status/cronjobs.py 0.00% 5 Missing ⚠️
taca/backup/backup.py 0.00% 4 Missing ⚠️
taca/delivery/delivery_classes.py 0.00% 3 Missing ⚠️
taca/server_status/server_status.py 0.00% 3 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #482      +/-   ##
==========================================
+ Coverage   26.04%   26.07%   +0.03%     
==========================================
  Files          37       37              
  Lines        5499     5510      +11     
==========================================
+ Hits         1432     1437       +5     
- Misses       4067     4073       +6     

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@kedhammar kedhammar left a comment

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The functional changes look good to me, although I'd advise testing everything thoroughly prior to deployment

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@ssjunnebo ssjunnebo left a comment

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Looks good! 👍

@aanil aanil merged commit 45879a5 into NationalGenomicsInfrastructure:master Aug 11, 2025
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3 participants