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Don't check for pod5/fast5 files #492

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Merged
ssjunnebo merged 2 commits into from
Oct 7, 2025
Merged

Don't check for pod5/fast5 files #492

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b81d6e2
Don't check for pod5/fast5 files
ssjunnebo Oct 7, 2025
2dfde26
Versioning
ssjunnebo Oct 7, 2025
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4 changes: 4 additions & 0 deletions VERSIONLOG.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
# TACA Version Log

## 20251007.2

Skip check for pod5/fast5 files

## 20251007.1

Skip toulligqc on ONT data if pod5/fast5 is missing
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2 changes: 1 addition & 1 deletion taca/__init__.py
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@@ -1,3 +1,3 @@
"""Main TACA module"""

__version__ = "1.6.6"
__version__ = "1.6.7"
12 changes: 6 additions & 6 deletions taca/nanopore/ONT_run_classes.py
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Expand Up @@ -111,12 +111,12 @@ def assert_contents(self):
assert self.has_file("/final_summary*.txt")

# Raw seq files
assert any(
[
dir in os.listdir(self.run_abspath)
for dir in ["pod5", "pod5_pass", "fast5", "fast5_pass"]
]
)
# assert any(
# [
# dir in os.listdir(self.run_abspath)
# for dir in ["pod5", "pod5_pass", "fast5", "fast5_pass"]
# ]
# ) TODO: put this back when we want to run toulligqc again

# NGI files from instrument
assert self.has_file("/pore_count_history.csv")
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