Trial handling: additional functionality and documentation#673

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kohlerca wants to merge 42 commits intoNeuralEnsemble:masterfrom

INM-6:enh/trial_by_trial_methods

Commits on Jun 18, 2025

Added methods to get all repetitions of a specific analog signal or spiketrain across trials
Cristiano Köhler
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Added docstrings for the new methods
Cristiano Köhler
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Added IDs to the spiketrains and analog signals in the generated test data
Cristiano Köhler
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Added unit tests for the trial-by-trial methods
Cristiano Köhler
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Corrected test names for the TrialsFromBlock test case
Cristiano Köhler
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Corrected test names for the TrialsFromBlock test case
Cristiano Köhler
committed

Commits on Sep 22, 2025

Fixed error if empty list is passed to TrialsFromLists
Cristiano Köhler
committed

Commits on Sep 25, 2025

Moved decorator to extract trials as list of SpikeTrainList from utils.py to trials.py. GPFA methods and unit tests adjusted.
Cristiano Köhler
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Changed argument names to make explicit that trials and other elements are accessed by indexes (instead of ambiguous terms ID or number).
Cristiano Köhler
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Comments with short function descriptions rewritten for consistency and clarity
Cristiano Köhler
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Module docstring rewritten for clarity.
Cristiano Köhler
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Added section on the accompanying tutorial.
Cristiano Köhler
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Updated copyright
Cristiano Köhler
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Commits on Oct 1, 2025

Organized imports to avoid repeated namespace accesses
Cristiano Köhler
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Commits on Oct 2, 2025

Updated module docstring
Cristiano Köhler
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Simplified method logic
Cristiano Köhler
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Added return type hints to all tests
Cristiano Köhler
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Refactored TestCase class setUp methods for clarity
Cristiano Köhler
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Improved documentation of the decorator test case
Cristiano Köhler
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Improved documentation of the data generation function
Cristiano Köhler
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Implemented base TestCase class with custom assertions for checking Neo objects
Cristiano Köhler
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Implemented base TestCase class with custom assertions for checking Neo objects
Cristiano Köhler
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Updated test cases to use base class
Cristiano Köhler
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Refactored decorator test case to use custom assertions
Cristiano Köhler
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Improved test case class documentation
Cristiano Köhler
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Improved documentation of each test
Cristiano Köhler
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Improved unit test for TrialsFromBlock description
Cristiano Köhler
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Refactor and extended unit tests to use custom assertions to perform specific value checks
Cristiano Köhler
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Split different unit tests
Cristiano Köhler
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Corrected typo
Cristiano Köhler
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Changed to use ABC (Python 3 style)
Cristiano Köhler
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Organized imports
Cristiano Köhler
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Added NotImplementedError exceptions to abstract methods
Cristiano Köhler
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Moved all methods with redundant code to base class
Cristiano Köhler
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Improved documentation of the base Trials class. Default for description is None.
Cristiano Köhler
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Replaced dynamic expected values by explicit values
Cristiano Köhler
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Commits on Oct 8, 2025

Revised docstrings for content and clarity. Added examples.
Cristiano Köhler
committed

Commits on Nov 6, 2025

Merge branch 'master' into enh/trial_by_trial_methods
Cristiano Köhler
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Fixed IndentationError in doctests
Cristiano Köhler
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Commits on Dec 2, 2025

Moved tutorial link in docstring to the branch on the trial tutorial
Cristiano Köhler
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Fixed error in assertion that checked the same segment
Cristiano Köhler
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Merge branch 'master' into enh/trial_by_trial_methods
kohlerca
authored