Add matnwb page

admin/config.yml

@@ -1016,9 +1016,9 @@ collections:
                     widget: "markdown"
 
 
-      - name: "privacy-policy"
-        label: "Privacy Policy"
-        file: "content/privacy-policy/_index.md"
+      - name: "policies"
+        label: "Policies"
+        file: "content/policies/_index.md"
         create: true
         fields:
           - label: "Title"

assets/jsconfig.json

@@ -3,8 +3,8 @@
   "baseUrl": ".",
   "paths": {
    "*": [
-    "../../Library/Caches/hugo_cache/modules/filecache/modules/pkg/mod/github.com/gohugoio/hugo-mod-jslibs-dist/popperjs/[email protected]/package/dist/cjs/*",
-    "../../Library/Caches/hugo_cache/modules/filecache/modules/pkg/mod/github.com/twbs/[email protected]+incompatible/js/*"
+    "../../../../Library/Caches/hugo_cache/modules/filecache/modules/pkg/mod/github.com/gohugoio/hugo-mod-jslibs-dist/popperjs/[email protected]/package/dist/cjs/*",
+    "../../../../Library/Caches/hugo_cache/modules/filecache/modules/pkg/mod/github.com/twbs/[email protected]+incompatible/js/*"
    ]
   }
  }

config/_default/menus.yaml

@@ -29,11 +29,11 @@ main:
     hasChildren: true
   - name: "News"
     weight: 1
-    url: "news/"
+    url: "https://us3.campaign-archive.com/home/?u=eacaccc485a4e5f36034bbdbd&id=a9718ab27f"
     parent: Community
   - name: "Events"
     weight: 2
-    url: "event-cards/"
+    url: "https://neurodatawithoutborders.github.io/nwb_hackathons/"
     parent: Community
   - name: "NWB Enhancement Proposals"
     weight: 3
@@ -51,13 +51,17 @@ main:
     weight: 6
     url: "working-groups/"
     parent: Community
+  - name: "MatNWB"
+    weight: 4
+    url: "matnwb/"
+    parent: The Software Ecosystem
 
   - name: "Using NWB"
     weight: 3
     url: "https://nwb-overview.readthedocs.io"
   - name: "Policies"
     weight: 4
-    url: "privacy-policy/"
+    url: "policies/"
 
 # Footer
 ### About
@@ -98,9 +102,3 @@ community:
   - name: "Working Groups"
     weight: 6
     url: "/working-groups"
-
-### Legal
-legal: 
-  - name: "Privacy Policy"
-    weight: 1
-    url: "/privacy-policy"

config/_default/params.yaml

@@ -3,7 +3,7 @@ logo: "/images/logo.png"
 cta:
   enable: true
   text: "Get Started"
-  link: /
+  link: "/converting-data-to-nwb/"
 
 # Footer
 footer_logo: "/images/colored-logo.png"

content/_index.md

@@ -6,49 +6,47 @@ hero_section:
     - title: Neurodata Without Borders
       subtitle: Version 2.0 FINAL Now Available
       btn_text: Read More
-      btn_link: /
-    - title: Neurodata Without Borders
-      subtitle: Version 2.0 FINAL Now Available
-      btn_text: Read More
-      btn_link: /
-    - title: Neurodata Without Borders
-      subtitle: Version 2.0 FINAL Now Available
-      btn_text: Read More
-      btn_link: /
+      btn_link: "https://github.com/NeurodataWithoutBorders/nwb-schema"
 banner_section:
   enable: true
-  title: Making databases about the brain more usable and accessible for
-    neuroscientists worldwide
+  title: "**This website is under construction.** Please excuse our appearance as we
+    work to improve the site.
+
+
+For the latest, please go do http://nwb.org.
+
+
+For feedback, file an issue here: https://github.com/NeurodataWithoutBorders/neurodatawithoutborders.github.io/issues"
 card_section:
   enable: true
   cards:
     - image: /images/github.png
       title: Users & Developers
       btn_text: Get Started
-      btn_link: /
+      btn_link: "http://nwb-overview.readthedocs.io/"
     - image: /images/question_mark.png
       title: Questions About NWB?
       btn_text: Ask Our Help Desk
-      btn_link: /
+      btn_link: "https://github.com/NeurodataWithoutBorders/helpdesk/discussions"
     - image: /images/community.png
       title: Connect with the Community
       btn_text: Join the Slack
-      btn_link: /
+      btn_link: "https://nwb-users.slack.com/join/shared_invite/zt-9bsx3xdj-wtUILLNzM8a0mOV_RywS~Q#/shared-invite/email"
     - image: /images/mail.png
       title: Join Our Mailing List
       btn_text: Sign Up
-      btn_link: /
+      btn_link: "https://mailchi.mp/fe2a9bc55a1a/nwb-signup"
 portfolio_section:
   enable: true
-  image: /images/portfolio.png
+  image: /images/ai_img.jpg
   heading: Neurodata Without Borders
-  paragraph: <a href=''>Neurodata Without Borders</a> (NWB) is a data standard for
+  paragraph: Neurodata Without Borders (NWB) is a data standard for
     neurophysiology, providing neuroscientists with a common standard to share,
     archive, use, and build analysis tools for neurophysiology data. NWB is
     designed to store a variety of neurophysiology data, including data from
     intracellular and extracellular electrophysiology experiments, data from
     optical physiology experiments, and tracking and stimulus data. <br><br> The
-    <a href=''>NWB team</a> consists of neuroscientists and software developers
+    <a href='/team'>NWB team</a> consists of neuroscientists and software developers
     who recognize that adoption of a unified data format is an important step
     toward breaking down the barriers to data sharing in neuroscience
   logos:
@@ -57,27 +55,27 @@ portfolio_section:
 news_section:
   enable: true
   btn_text: See All New
-  btn_link: /
+  btn_link: /news
 sponsers_section:
   enable: true
   logos:
-    - image: /images/sponser-1.png
-      link: /
-    - image: /images/sponser-2.png
-      link: /
-    - image: /images/sponser-3.png
-      link: /
-    - image: /images/sponser-4.png
-      link: /
-    - image: /images/sponser-5.png
-      link: /
-    - image: /images/sponser-6.png
-      link: /
-    - image: /images/sponser-7.png
-      link: /
+    - image: /images/sponsor-allen-institute.png
+      link: "https://alleninstitute.org/"
+    - image: /images/sponsor-hhmi.png
+      link: "https://www.hhmi.org/"
+    - image: /images/sponsor-kavli.png
+      link: "https://www.kavlifoundation.org/"
+    - image: /images/sponsor-lbnl.png
+      link: "https://www.lbl.gov/"
+    - image: /images/sponsor-mathworks.png
+      link: "https://www.mathworks.com/"
+    - image: /images/sponsor-simons-foundation.png
+      link: "https://www.simonsfoundation.org/"
+    - image: /images/sponsor-incf.png
+      link: "https://www.incf.org/"
 cta_section:
   enable: true
   heading: Join our mailing list to receive news and notices
   btn_text: Register
-  btn_link: /
+  btn_link: "https://mailchi.mp/fe2a9bc55a1a/nwb-signup"
 ---

content/about-us/_index.md

@@ -1,9 +1,8 @@
 ---
-title: About Us
+title: About NWB
 about_section:
   enable: true
   image: /images/about-nwb.png
-  title: About NWB
   content: Progress in modern science is enabled by data sharing. There are major
     obstacles, however, that limit the open exchange of data particularly in
     neuroscience, a field where many small laboratories are pursuing diverse

content/contact-us/_index.md

@@ -10,35 +10,19 @@ community_section:
       title: NWB Help Desk
       content: Visit our online help desk and discussion forum to ask questions
         related to the Neurodata Without Borders data standard and software.
+      url: "https://github.com/NeurodataWithoutBorders/helpdesk/discussions"
     - image: /images/slack.png
       title: NWB Slack Workspace
       content: Join the open Slack workspace to interact directly with the developers
         and other users.
+      url: "https://nwb-users.slack.com/join/shared_invite/zt-9bsx3xdj-wtUILLNzM8a0mOV_RywS~Q#/shared-invite/email"
     - image: /images/contact-github.png
       title: NWB GitHub
       content: Contribute to our open source repositories on GitHub.
+      url: "https://github.com/NeurodataWithoutBorders"
     - image: /images/contact-mail.png
       title: NWB Mailing List
       content: Sign up for our mailing list to receive periodic email updates on
         Neurodata Without Borders.
-live_chat:
-  enable: true
-  title: Contact Us
-  content: Lorem ipsum dolor sit amet consectetur adipiscing elit, convallis
-    aliquet tristique habitasse inceptos class eget ante, dignissim fusce
-    montes.
-  boxes:
-    - icon: /images/call.png
-      title: Number
-      content: +32 15/79.22.55
-      link: "+3215792255"
-      button:
-        enable: true
-    - icon: /images/email.png
-      title: Email Contact
-      link: [email protected]
-      content: [email protected]
-    - icon: /images/location.png
-      title: Our Address
-      content: Zilverberklaan 80, 2820 Rijmenam, België
+      url: "https://mailchi.mp/fe2a9bc55a1a/nwb-signup"
 ---

content/converting-data-to-nwb/_index.md

@@ -28,24 +28,24 @@ available_tools_section:
             - feature: "Facilitates uploading to DANDI Archive"
           limitations: "May require manual addition of lab-specific data"
           resources:
-            - text: "Text Tutorial"
-              link: /
+            - text: "Text Tutorials"
+              url: "https://nwb-guide.readthedocs.io/en/latest/tutorials/index.html"
             - text: "YouTube Walkthrough"
-              link: /
+              url: "https://www.youtube.com/watch?v=EhhdDVuHAZ0"
 
         - icon: "/images/neuroconv.png"
           title: "NeuroConv"
           type: "Python library (underlies NWB GUIDE)"
           features:
-            - feature: "Supports 44+ neurophysiology data formats"
+            - feature: "Supports 45+ neurophysiology data formats"
             - feature: "Offers more flexibility than NWB GUIDE"
             - feature: "Provides tools for post-hoc time alignment of multiple data streams"
             - feature: "Supports cloud deployment"
           resources:
             - text: "GitHub Repository"
-              link: /
+              url: "https://github.com/catalystneuro/neuroconv"
             - text: "Documentation"
-              link: /
+              url: "https://neuroconv.readthedocs.io"
 
         - icon: "/images/pynwb.png"
           title: "PyNWB"
@@ -56,13 +56,13 @@ available_tools_section:
             - feature: "Developing custom NWB extensions"
           resources:
             - text: "GitHub Repository"
-              link: /
+              url: "https://github.com/NeurodataWithoutBorders/pynwb"
             - text: "Documentation"
-              link: /
+              url: "https://pynwb.readthedocs.io"
             - text: "Tutorials"
-              link: /
+              url: "https://pynwb.readthedocs.io/en/latest/tutorials/index.html"
             - text: "NWB YouTube Channel"
-              link: /
+              url: "https://www.youtube.com/@NeurodataWithoutBorders"
 
         - icon: "/images/matnwb.png"
           title: "MatNWB"
@@ -72,11 +72,11 @@ available_tools_section:
             - feature: "Working with unsupported data formats"
           resources:
             - text: "GitHub Repository"
-              link: /
+              url: "https://github.com/NeurodataWithoutBorders/matnwb"
             - text: "Tutorials"
-              link: /
+              url: "https://github.com/NeurodataWithoutBorders/matnwb?tab=readme-ov-file#tutorials"
             - text: "NWB YouTube Channel"
-              link: /
+              url: "https://www.youtube.com/@NeurodataWithoutBorders"
 
 ### Choosing Tools
 choosing_tools:

content/grants-and-projects/_index.md

@@ -1,5 +1,5 @@
 ---
-title: Grants And Projects
+title: Grants and Projects
 sponsered_projects:
   enable: true
   boxes:
@@ -15,12 +15,24 @@ sponsered_projects:
         support, and coverage of new technologies and 2) neuroscience tools and
         technologies by maintaining core NWB technologies and integrating with a
         wide array of powerful data tools and technologies.
-      image: /images/advanced-nd.png
+      image: /images/nwb_elife_fig1.jpg
+    - title: "DANDI: Distributed Archives for Neurophysiology Data Integration"
+      image: /images/dandi-logo-square_sw.png
+      content: "The National Institutes of Health, through project <a href='https://projectreporter.nih.gov/project_info_description.cfm?aid=9795271&icde=45848280&ddparam=&ddvalue=&ddsub=&cr=2&csb=default&cs=ASC&pball='>1R24MH117295</a>, funded <a href='https://satra.cogitatum.org/'>Satrajit Ghosh</a> (Massachusetts Institute of Technology) and Yaroslav Halchenko (<a href='http://centerforopenneuroscience.org/'>Center for Open Neuroscience</a>) to create the DANDI archive for neurophysiology Data.
+
+    * Provides a cloud platform for versioned neurophysiology data storage for the purposes of collaboration, archiving, and preservation.
+
+    * Provide easy to use tools for neurophysiology data submission and access in the archive
+
+    * Facilitates adoption of NWB via standardized applications for data ingestion, visualization and processing.
+
+
+See the <a href='https://dandiarchive.org/'> DANDI website</a> and <a href='https://github.com/dandi'>GitHub organization</a> for details. (August 2019-April 2029)."
 intro_section:
   enable: true
   title: Kavli Sponsored Projects
   subtitle: Kavli Sponsored Projects
-  content: <a href=''>The Kavli Foundation</a> has provided seed grants to aid
+  content: <a href='https://www.kavlifoundation.org/'>The Kavli Foundation</a> has provided seed grants to aid
     labs in standardizing their experimental data using the NWB data format.
     Funds were used to support the building and sharing of data or software in
     the NWB ecosystem. We are no longer accepting applications for 2022 and
@@ -130,16 +142,6 @@ sponsers:
         institute: EPFL
         content: Integrate NWB data format within the <a href=''>DeepLabCut</a>
           ecosystem
-      - sponser_name:
-          - name: Alexander Mathis
-        institute: EPFL
-        content: Integrate NWB data format within the <a href=''>DeepLabCut</a>
-          ecosystem
-      - sponser_name:
-          - name: Alexander Mathis
-        institute: EPFL
-        content: Integrate NWB data format within the <a href=''>DeepLabCut</a>
-          ecosystem
   - year: 2019
     boxes:
       - sponser_name:
@@ -181,25 +183,25 @@ sponsers:
 past_projects_section:
   enable: true
   projects:
-    - image: /images/nwbn.png
+    - image: /images/project_components.png
       title: "NWB: A Data Standard and Software Ecosystem for Neurophysiology"
       content: The National Institutes of Health, through project <a
-        href=''>1R24MH116922</a>, funded <a href=''>Oliver Rübel</a> (Lawrence
-        Berkeley National Laboratory) and <a href=''>Lydia Ng</a> (Allen
+        href='https://projectreporter.nih.gov/project_info_description.cfm?aid=9582696&icde=44882289'>1R24MH116922</a>, funded <a href='https://dav.lbl.gov/~oruebel/'>Oliver Rübel</a> (Lawrence
+        Berkeley National Laboratory) and <a href='https://alleninstitute.org/what-we-do/brain-science/about/team/staff-profiles/lydia-ng/'>Lydia Ng</a> (Allen
         Institute for Brain Science) to continue development of the NWB data
         format and software ecosystem to enable standardization, sharing, and
         reuse of neurophysiology data and analyses, enhancing discovery and
         reproducibility. This funding is part of the NIH’s BRAIN Initiative
         support to develop standards.(September 2018-May 2020). For updates on
-        this project see our Progress Reports page.
-    - image: /images/shared-analysis.png
+        this project see our <a href='http://www.nwb.org/progress-reports/'>Progress Reports page</a>.
+    - image: /images/enabling_sharing_nwb.png
       title: Enabling Shared Analysis and Processing of Large Neurophysiology Data
-      content: The National Institutes of Health, through project 1R44MH115731, funded
+      content: The National Institutes of Health, through project <a href='https://projectreporter.nih.gov/project_info_description.cfm?aid=9795271&icde=45848280&ddparam=&ddvalue=&ddsub=&cr=2&csb=default&cs=ASC&pball='>1R44MH115731</a>, funded
         William Schroeder (Kitware, Inc.) to create software tools to browse,
         process, analyze, and visualize NWB data. This funding is part of the
         NIH’s BRAIN Initiative Small Business Innovation Research (SBIR) grant
         program. (July 2017-June 2020).
-    - image: /images/computing-project.png
+    - image: /images/hpc_img.png
       title: High Performance Computing Project at the Lawerence Berkeley National
         Laboratory
       content: The Kavli Foundation provided support (2016-2018) to Kristofer Bouchard
@@ -216,10 +218,10 @@ boxes:
         Rübel at the Lawrence Berkeley National Lab to support community
         engagement, outreach and software development. This program is currently
         supporting Benjamin Dichter as a community liaison for NWB.
-      image: /images/community-liason.png
+      image: /images/community_liaison.png
     - title: Simons Foundation Sponsors Development of MatNWB
       content: The Simons Foundation funds projects (Aug.2017 – present) to develop
         and expand the NWB2.0 Matlab API MatNWB to allow for adoption by a
         larger portion of the neuroscience community.
-      image: /images/simons-foundation.png
+      image: "https://github.com/NeurodataWithoutBorders/matnwb/raw/master/logo/logo_matnwb_small.png"
 ---