v0.2.2

0.2.2 (2026-01-14)

Bug Fixes

• corrected the mge_report as optional output (6b3109d)

v0.2.1

0.2.1 (2025-06-12)

Bug Fixes

• Updated Unicycler to version 0.5.1, as of issue #34 (3913d00)

v0.2.0

0.2.0 (2025-02-05)

Bug Fixes

• added checks for missing parameters (ca37a7a)
• added modules for bakta, mobsuite, and amrfinderplus, and added their options and outputs (52871cc)
• added software version output (10f8e26)
• corrected bug with samplesheet script, as of #30 (8fa8d36)

Features

• added optional plasmid characterization subworkflow (6510677)

What's Changed

• fix: corrected bug with samplesheet script, as of #30 by @hkaspersen in #31
• Adding plasmid characterization pipeline by @hkaspersen in #29

Full Changelog: v0.1.1...v0.2.0

v0.1.1

0.1.1 (2025-01-30)

Bug Fixes

• added merging of kraken data (95f5b31)
• added modules for fastqc, multiqc, downsampling, and kraken (c4f8fae)
• added reporting of kraken results (b65fb7a)
• corrected channel input and output (9899ab4)
• corrected channel input to subsampled reads (609253e)
• corrected comma (c916d23)
• corrected error and added library (1dc437a)
• corrected sample name suffix removal (11b39b9)

What's Changed

• Created logo by @hkaspersen in #16
• updated logo by @hkaspersen in #17
• updated track logo by @hkaspersen in #18
• feat: Addition of hybrid assembly track by @hkaspersen in #19
• ci: added token to action by @hkaspersen in #24
• update by @hkaspersen in #25
• Updated error by @hkaspersen in #26

Full Changelog: v.1.0.0...v0.1.1

Draft assembly track release

This is the release of the draft assembly track of the pipeline.

Draft assembly track

This is the first release of the draft assembly track.