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Merged
matentzn merged 1 commit into from
Jan 22, 2021
Merged

Update schema #1420

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699 changes: 456 additions & 243 deletions _config.yml
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11 changes: 6 additions & 5 deletions registry/obo_context.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@
"ERO": "http://purl.obolibrary.org/obo/ERO_",
"EUPATH": "http://purl.obolibrary.org/obo/EUPATH_",
"EV": "http://purl.obolibrary.org/obo/EV_",
"EXO": "http://purl.obolibrary.org/obo/EXO_",
"ExO": "http://purl.obolibrary.org/obo/ExO_",
"FAO": "http://purl.obolibrary.org/obo/FAO_",
"FBSP": "http://purl.obolibrary.org/obo/FBSP_",
"FBbi": "http://purl.obolibrary.org/obo/FBbi_",
Expand Down Expand Up @@ -90,8 +90,9 @@
"HAO": "http://purl.obolibrary.org/obo/HAO_",
"HOM": "http://purl.obolibrary.org/obo/HOM_",
"HP": "http://purl.obolibrary.org/obo/HP_",
"HSAPDV": "http://purl.obolibrary.org/obo/HSAPDV_",
"HSO": "http://purl.obolibrary.org/obo/HSO_",
"HTN": "http://purl.obolibrary.org/obo/HTN_",
"HsapDv": "http://purl.obolibrary.org/obo/HsapDv_",
"IAO": "http://purl.obolibrary.org/obo/IAO_",
"ICEO": "http://purl.obolibrary.org/obo/ICEO_",
"ICO": "http://purl.obolibrary.org/obo/ICO_",
Expand Down Expand Up @@ -122,7 +123,6 @@
"MIRNAO": "http://purl.obolibrary.org/obo/MIRNAO_",
"MIRO": "http://purl.obolibrary.org/obo/MIRO_",
"MMO": "http://purl.obolibrary.org/obo/MMO_",
"MMUSDV": "http://purl.obolibrary.org/obo/MMUSDV_",
"MO": "http://purl.obolibrary.org/obo/MO_",
"MOD": "http://purl.obolibrary.org/obo/MOD_",
"MONDO": "http://purl.obolibrary.org/obo/MONDO_",
Expand All @@ -132,6 +132,7 @@
"MPIO": "http://purl.obolibrary.org/obo/MPIO_",
"MRO": "http://purl.obolibrary.org/obo/MRO_",
"MS": "http://purl.obolibrary.org/obo/MS_",
"MmusDv": "http://purl.obolibrary.org/obo/MmusDv_",
"NBO": "http://purl.obolibrary.org/obo/NBO_",
"NCBITaxon": "http://purl.obolibrary.org/obo/NCBITaxon_",
"NCIT": "http://purl.obolibrary.org/obo/NCIT_",
Expand All @@ -155,7 +156,6 @@
"OHD": "http://purl.obolibrary.org/obo/OHD_",
"OHMI": "http://purl.obolibrary.org/obo/OHMI_",
"OHPI": "http://purl.obolibrary.org/obo/OHPI_",
"OLATDV": "http://purl.obolibrary.org/obo/OLATDV_",
"OMIABIS": "http://purl.obolibrary.org/obo/OMIABIS_",
"OMIT": "http://purl.obolibrary.org/obo/OMIT_",
"OMO": "http://purl.obolibrary.org/obo/OMO_",
Expand All @@ -169,11 +169,11 @@
"OPMI": "http://purl.obolibrary.org/obo/OPMI_",
"ORNASEQ": "http://purl.obolibrary.org/obo/ORNASEQ_",
"OVAE": "http://purl.obolibrary.org/obo/OVAE_",
"OlatDv": "http://purl.obolibrary.org/obo/OlatDv_",
"PAO": "http://purl.obolibrary.org/obo/PAO_",
"PATO": "http://purl.obolibrary.org/obo/PATO_",
"PCO": "http://purl.obolibrary.org/obo/PCO_",
"PDRO": "http://purl.obolibrary.org/obo/PDRO_",
"PDUMDV": "http://purl.obolibrary.org/obo/PDUMDV_",
"PD_ST": "http://purl.obolibrary.org/obo/PD_ST_",
"PECO": "http://purl.obolibrary.org/obo/PECO_",
"PGDSO": "http://purl.obolibrary.org/obo/PGDSO_",
Expand All @@ -189,6 +189,7 @@
"PSDO": "http://purl.obolibrary.org/obo/PSDO_",
"PSO": "http://purl.obolibrary.org/obo/PSO_",
"PW": "http://purl.obolibrary.org/obo/PW_",
"PdumDv": "http://purl.obolibrary.org/obo/PdumDv_",
"RESID": "http://purl.obolibrary.org/obo/RESID_",
"REX": "http://purl.obolibrary.org/obo/REX_",
"RNAO": "http://purl.obolibrary.org/obo/RNAO_",
Expand Down
25 changes: 13 additions & 12 deletions registry/obo_prefixes.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@
,[ sh:prefix "CHIRO" ; sh:namespace "http://purl.obolibrary.org/obo/CHIRO_"]
,[ sh:prefix "CHMO" ; sh:namespace "http://purl.obolibrary.org/obo/CHMO_"]
,[ sh:prefix "CIDO" ; sh:namespace "http://purl.obolibrary.org/obo/CIDO_"]
,[ sh:prefix "CIO" ; sh:namespace "http://purl.obolibrary.org/obo/CIO_"]
,[ sh:prefix "CL" ; sh:namespace "http://purl.obolibrary.org/obo/CL_"]
,[ sh:prefix "CLAO" ; sh:namespace "http://purl.obolibrary.org/obo/CLAO_"]
,[ sh:prefix "CLO" ; sh:namespace "http://purl.obolibrary.org/obo/CLO_"]
Expand All @@ -50,7 +51,7 @@
,[ sh:prefix "EMAPA" ; sh:namespace "http://purl.obolibrary.org/obo/EMAPA_"]
,[ sh:prefix "ENVO" ; sh:namespace "http://purl.obolibrary.org/obo/ENVO_"]
,[ sh:prefix "EUPATH" ; sh:namespace "http://purl.obolibrary.org/obo/EUPATH_"]
,[ sh:prefix "EXO" ; sh:namespace "http://purl.obolibrary.org/obo/EXO_"]
,[ sh:prefix "ExO" ; sh:namespace "http://purl.obolibrary.org/obo/ExO_"]
,[ sh:prefix "FAO" ; sh:namespace "http://purl.obolibrary.org/obo/FAO_"]
,[ sh:prefix "FBbi" ; sh:namespace "http://purl.obolibrary.org/obo/FBbi_"]
,[ sh:prefix "FBbt" ; sh:namespace "http://purl.obolibrary.org/obo/FBbt_"]
Expand All @@ -71,7 +72,8 @@
,[ sh:prefix "HANCESTRO" ; sh:namespace "http://purl.obolibrary.org/obo/HANCESTRO_"]
,[ sh:prefix "HAO" ; sh:namespace "http://purl.obolibrary.org/obo/HAO_"]
,[ sh:prefix "HOM" ; sh:namespace "http://purl.obolibrary.org/obo/HOM_"]
,[ sh:prefix "HSAPDV" ; sh:namespace "http://purl.obolibrary.org/obo/HSAPDV_"]
,[ sh:prefix "HsapDv" ; sh:namespace "http://purl.obolibrary.org/obo/HsapDv_"]
,[ sh:prefix "HSO" ; sh:namespace "http://purl.obolibrary.org/obo/HSO_"]
,[ sh:prefix "HTN" ; sh:namespace "http://purl.obolibrary.org/obo/HTN_"]
,[ sh:prefix "IAO" ; sh:namespace "http://purl.obolibrary.org/obo/IAO_"]
,[ sh:prefix "ICEO" ; sh:namespace "http://purl.obolibrary.org/obo/ICEO_"]
Expand All @@ -90,14 +92,15 @@
,[ sh:prefix "MIAPA" ; sh:namespace "http://purl.obolibrary.org/obo/MIAPA_"]
,[ sh:prefix "MICRO" ; sh:namespace "http://purl.obolibrary.org/obo/MICRO_"]
,[ sh:prefix "MMO" ; sh:namespace "http://purl.obolibrary.org/obo/MMO_"]
,[ sh:prefix "MMUSDV" ; sh:namespace "http://purl.obolibrary.org/obo/MMUSDV_"]
,[ sh:prefix "MmusDv" ; sh:namespace "http://purl.obolibrary.org/obo/MmusDv_"]
,[ sh:prefix "MOD" ; sh:namespace "http://purl.obolibrary.org/obo/MOD_"]
,[ sh:prefix "MONDO" ; sh:namespace "http://purl.obolibrary.org/obo/MONDO_"]
,[ sh:prefix "MOP" ; sh:namespace "http://purl.obolibrary.org/obo/MOP_"]
,[ sh:prefix "MP" ; sh:namespace "http://purl.obolibrary.org/obo/MP_"]
,[ sh:prefix "MPATH" ; sh:namespace "http://purl.obolibrary.org/obo/MPATH_"]
,[ sh:prefix "MPIO" ; sh:namespace "http://purl.obolibrary.org/obo/MPIO_"]
,[ sh:prefix "MRO" ; sh:namespace "http://purl.obolibrary.org/obo/MRO_"]
,[ sh:prefix "MS" ; sh:namespace "http://purl.obolibrary.org/obo/MS_"]
,[ sh:prefix "NBO" ; sh:namespace "http://purl.obolibrary.org/obo/NBO_"]
,[ sh:prefix "NCBITaxon" ; sh:namespace "http://purl.obolibrary.org/obo/NCBITaxon_"]
,[ sh:prefix "NCIT" ; sh:namespace "http://purl.obolibrary.org/obo/NCIT_"]
Expand All @@ -114,7 +117,7 @@
,[ sh:prefix "OHD" ; sh:namespace "http://purl.obolibrary.org/obo/OHD_"]
,[ sh:prefix "OHMI" ; sh:namespace "http://purl.obolibrary.org/obo/OHMI_"]
,[ sh:prefix "OHPI" ; sh:namespace "http://purl.obolibrary.org/obo/OHPI_"]
,[ sh:prefix "OLATDV" ; sh:namespace "http://purl.obolibrary.org/obo/OLATDV_"]
,[ sh:prefix "OlatDv" ; sh:namespace "http://purl.obolibrary.org/obo/OlatDv_"]
,[ sh:prefix "OMIABIS" ; sh:namespace "http://purl.obolibrary.org/obo/OMIABIS_"]
,[ sh:prefix "OMIT" ; sh:namespace "http://purl.obolibrary.org/obo/OMIT_"]
,[ sh:prefix "OMO" ; sh:namespace "http://purl.obolibrary.org/obo/OMO_"]
Expand All @@ -130,7 +133,7 @@
,[ sh:prefix "OVAE" ; sh:namespace "http://purl.obolibrary.org/obo/OVAE_"]
,[ sh:prefix "PCO" ; sh:namespace "http://purl.obolibrary.org/obo/PCO_"]
,[ sh:prefix "PDRO" ; sh:namespace "http://purl.obolibrary.org/obo/PDRO_"]
,[ sh:prefix "PDUMDV" ; sh:namespace "http://purl.obolibrary.org/obo/PDUMDV_"]
,[ sh:prefix "PdumDv" ; sh:namespace "http://purl.obolibrary.org/obo/PdumDv_"]
,[ sh:prefix "PECO" ; sh:namespace "http://purl.obolibrary.org/obo/PECO_"]
,[ sh:prefix "PHIPO" ; sh:namespace "http://purl.obolibrary.org/obo/PHIPO_"]
,[ sh:prefix "PLANA" ; sh:namespace "http://purl.obolibrary.org/obo/PLANA_"]
Expand All @@ -147,6 +150,7 @@
,[ sh:prefix "SO" ; sh:namespace "http://purl.obolibrary.org/obo/SO_"]
,[ sh:prefix "SPD" ; sh:namespace "http://purl.obolibrary.org/obo/SPD_"]
,[ sh:prefix "STATO" ; sh:namespace "http://purl.obolibrary.org/obo/STATO_"]
,[ sh:prefix "SWO" ; sh:namespace "http://purl.obolibrary.org/obo/SWO_"]
,[ sh:prefix "SYMP" ; sh:namespace "http://purl.obolibrary.org/obo/SYMP_"]
,[ sh:prefix "TAXRANK" ; sh:namespace "http://purl.obolibrary.org/obo/TAXRANK_"]
,[ sh:prefix "TO" ; sh:namespace "http://purl.obolibrary.org/obo/TO_"]
Expand All @@ -156,33 +160,30 @@
,[ sh:prefix "UO" ; sh:namespace "http://purl.obolibrary.org/obo/UO_"]
,[ sh:prefix "UPHENO" ; sh:namespace "http://purl.obolibrary.org/obo/UPHENO_"]
,[ sh:prefix "VO" ; sh:namespace "http://purl.obolibrary.org/obo/VO_"]
,[ sh:prefix "VT" ; sh:namespace "http://purl.obolibrary.org/obo/VT_"]
,[ sh:prefix "VTO" ; sh:namespace "http://purl.obolibrary.org/obo/VTO_"]
,[ sh:prefix "WBbt" ; sh:namespace "http://purl.obolibrary.org/obo/WBbt_"]
,[ sh:prefix "WBls" ; sh:namespace "http://purl.obolibrary.org/obo/WBls_"]
,[ sh:prefix "WBPhenotype" ; sh:namespace "http://purl.obolibrary.org/obo/WBPhenotype_"]
,[ sh:prefix "XCO" ; sh:namespace "http://purl.obolibrary.org/obo/XCO_"]
,[ sh:prefix "XLMOD" ; sh:namespace "http://purl.obolibrary.org/obo/XLMOD_"]
,[ sh:prefix "XPO" ; sh:namespace "http://purl.obolibrary.org/obo/XPO_"]
,[ sh:prefix "ZECO" ; sh:namespace "http://purl.obolibrary.org/obo/ZECO_"]
,[ sh:prefix "ZFS" ; sh:namespace "http://purl.obolibrary.org/obo/ZFS_"]
,[ sh:prefix "ZP" ; sh:namespace "http://purl.obolibrary.org/obo/ZP_"]
,[ sh:prefix "CIO" ; sh:namespace "http://purl.obolibrary.org/obo/CIO_"]
,[ sh:prefix "ERO" ; sh:namespace "http://purl.obolibrary.org/obo/ERO_"]
,[ sh:prefix "FOBI" ; sh:namespace "http://purl.obolibrary.org/obo/FOBI_"]
,[ sh:prefix "GSSO" ; sh:namespace "http://purl.obolibrary.org/obo/GSSO_"]
,[ sh:prefix "HP" ; sh:namespace "http://purl.obolibrary.org/obo/HP_"]
,[ sh:prefix "KISAO" ; sh:namespace "http://purl.obolibrary.org/obo/KISAO_"]
,[ sh:prefix "MAMO" ; sh:namespace "http://purl.obolibrary.org/obo/MAMO_"]
,[ sh:prefix "MS" ; sh:namespace "http://purl.obolibrary.org/obo/MS_"]
,[ sh:prefix "SBO" ; sh:namespace "http://purl.obolibrary.org/obo/SBO_"]
,[ sh:prefix "SWO" ; sh:namespace "http://purl.obolibrary.org/obo/SWO_"]
,[ sh:prefix "TXPO" ; sh:namespace "http://purl.obolibrary.org/obo/TXPO_"]
,[ sh:prefix "VT" ; sh:namespace "http://purl.obolibrary.org/obo/VT_"]
,[ sh:prefix "XLMOD" ; sh:namespace "http://purl.obolibrary.org/obo/XLMOD_"]
,[ sh:prefix "ZFS" ; sh:namespace "http://purl.obolibrary.org/obo/ZFS_"]
,[ sh:prefix "SIBO" ; sh:namespace "http://purl.obolibrary.org/obo/SIBO_"]
,[ sh:prefix "FIX" ; sh:namespace "http://purl.obolibrary.org/obo/FIX_"]
,[ sh:prefix "VARIO" ; sh:namespace "http://purl.obolibrary.org/obo/VARIO_"]
,[ sh:prefix "OGI" ; sh:namespace "http://purl.obolibrary.org/obo/OGI_"]
,[ sh:prefix "REX" ; sh:namespace "http://purl.obolibrary.org/obo/REX_"]
,[ sh:prefix "VARIO" ; sh:namespace "http://purl.obolibrary.org/obo/VARIO_"]
,[ sh:prefix "CEPH" ; sh:namespace "http://purl.obolibrary.org/obo/CEPH_"]
,[ sh:prefix "EHDAA2" ; sh:namespace "http://purl.obolibrary.org/obo/EHDAA2_"]
,[ sh:prefix "RNAO" ; sh:namespace "http://purl.obolibrary.org/obo/RNAO_"]
Expand Down
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