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3 changes: 2 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -41,4 +41,5 @@ output/
*.log

# R environment settings file
.Renviron
.Renviron
.DS_Store
12 changes: 6 additions & 6 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
Package: Achilles
Type: Package
Title: Achilles Data Source Characterization
Version: 1.8
Date: 2025-10-10
Version: 1.8.0
Date: 2025-12-02
Authors@R: c(
person("Frank", "DeFalco", email = "fdefalco@ohdsi.org", role = c("aut","cre")),
person("Patrick", "Ryan", email = "ryan@ohdsi.org", role = c("aut")),
Expand All @@ -24,12 +24,12 @@ Description: Automated Characterization of Health Information at Large-Scale
variety of Observational Health Data Sciences and Informatics community
applications.
Depends:
DatabaseConnector (>= 2.0.0),
DatabaseConnector (>= 7.0.0),
R (>= 4.0.0)
Imports:
DBI,
DBI (>= 1.0.0),
duckdb,
SqlRender (>= 1.6.0),
SqlRender (>= 1.19.2),
dplyr,
jsonlite,
ParallelLogger,
Expand All @@ -49,7 +49,7 @@ Suggests:
VignetteBuilder: knitr
License: Apache License
Roxygen: list()
RoxygenNote: 7.2.3
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://ohdsi.github.io/Achilles/, https://github.com/OHDSI/Achilles
BugReports: https://github.com/OHDSI/Achilles/issues
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3 changes: 1 addition & 2 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,7 @@ import(ParallelLogger)
import(SqlRender)
import(dplyr)
importFrom(data.table,fwrite)
importFrom(dplyr,desc)
importFrom(dplyr,ntile)
importFrom(dplyr,rename_with)
importFrom(rlang,.data)
importFrom(stats,aggregate)
importFrom(stats,cycle)
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44 changes: 44 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,3 +1,47 @@
# Achilles 1.8

## Improvements and New Features

- **Export Enhancements**
- Added `unit_concept_id` to ARES export of measurement tables.
- Improved unit concept ID naming and handling.
- Added export of the location table to ARES.
- Added database summary reporting.

- **Performance Improvements**
- Refactored performance logs to be captured directly (not just through console logs).
- Improved performance of ARES export, especially for DuckDB.
- Optimized analyses for better performance, including analyses 117 and 1815.

- **Code Quality and Maintenance**
- Fixed ambiguous `dplyr::select` statements and standardized column name casing (e.g., `IS_DEFAULT` → `is_default`).
- Added missing SQL scripts for performance tracking.
- Fixed fromJSON method usage for correctness.
- Fixed errors when creating metadata tables with zero-length vectors.
- Moved repeated subqueries to temp tables in some analyses.
- Trimmed trailing whitespaces in export scripts.

- **Bug Fixes**
- Fixed crash during `exportToAres` (DuckDB) related to unit concept IDs.
- Handled missing server values in temporal characterization functions.

- **Documentation**
- Updated and added links in the `DESCRIPTION` file.

## Notable Commits

- [Fix column name case: IS_DEFAULT → is_default](https://github.com/OHDSI/Achilles/commit/134bc0a7e0159dde85653ac41c1e73d8f4123fd1)
- [Ambiguous dplyr::select statements](https://github.com/OHDSI/Achilles/commit/889999c7a8b59476b8d4d95ee0d4d4a842db81ff)
- [Add db summary](https://github.com/OHDSI/Achilles/commit/87790da7453f0c8c2aa6d8e5071f5fa7a0a397fe)
- [Location table export to ARES](https://github.com/OHDSI/Achilles/commit/d5199716fca61bf4b45ab38ee8c1c441633743bc)
- [Improve performance of analysis 117](https://github.com/OHDSI/Achilles/commit/f9405e4a3b1a03ba4e4603db5774de96c5d8d3f6)
- [Add links to DESCRIPTION](https://github.com/OHDSI/Achilles/commit/c0f1a934c949a5b989f02eb56e271101306e1ed9)
- [Fix fromJSON correct method usage](https://github.com/OHDSI/Achilles/commit/b6ff65524a34da285e6340236791b00f6e32a39d)

---

For more, visit the [develop branch commit history](https://github.com/OHDSI/Achilles/commits?sha=develop&sort=updated).

# Achilles 1.7.2

1. Improved test setup management
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