[backend/client] fix file handling in upsert by adding files versions (#14585)

[JeremyCloarec]

Proposed changes

• fix file handling in upsert by adding files versions alongside other files infos

Related issues

• fix Playbook: manipulating container files even if not needed #14585

Checklist

• I consider the submitted work as finished
• I tested the code for its functionality
• I wrote test cases for the relevant uses case (coverage and e2e)
• I added/update the relevant documentation (either on github or on notion)
• Where necessary I refactored code to improve the overall quality

Further comments

[codecov]

Codecov Report

❌ Patch coverage is 55.55556% with 24 lines in your changes missing coverage. Please review.
✅ Project coverage is 32.37%. Comparing base (75ae528) to head (afb3ead).
⚠️ Report is 13 commits behind head on master.

Files with missing lines	Patch %	Lines
client-python/pycti/utils/opencti_stix2.py	25.00%	6 Missing ⚠️
...latform/opencti-graphql/src/database/middleware.ts	0.00%	6 Missing ⚠️
...platform/opencti-graphql/src/utils/upsert-utils.js	0.00%	5 Missing ⚠️
client-python/pycti/entities/opencti_channel.py	0.00%	1 Missing ⚠️
client-python/pycti/entities/opencti_event.py	0.00%	1 Missing ⚠️
client-python/pycti/entities/opencti_grouping.py	0.00%	1 Missing ⚠️
client-python/pycti/entities/opencti_language.py	0.00%	1 Missing ⚠️
client-python/pycti/entities/opencti_narrative.py	0.00%	1 Missing ⚠️
...python/pycti/entities/opencti_security_coverage.py	0.00%	1 Missing ⚠️
client-python/pycti/entities/opencti_task.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff            @@
##           master   #14614    +/-   ##
========================================
  Coverage   32.36%   32.37%            
========================================
  Files        3096     3096            
  Lines      210896   211050   +154     
  Branches    38196    38257    +61     
========================================
+ Hits        68262    68322    +60     
- Misses     142634   142728    +94     

Flag	Coverage Δ
opencti-client-python	45.58% <69.04%> (+0.08%)	⬆️
opencti-front	2.83% <ø> (+<0.01%)	⬆️
opencti-graphql	67.74% <8.33%> (+<0.01%)	⬆️

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