Tools like maestro switch to hexadecimal outputs after 100k atoms, e.g. A000G.
CONECT records in this format raise an error in the PDBStructure loader.
This PR #663 adds a try/except to skip CONECT records if they cannot be parsed, however it would be better to keep all CONECT records.
This is how mdtraj re-wrote pdbstructure.py to parse the hybrid36 convention:
https://github.com/mdtraj/mdtraj/pull/1849/changes
MDAnalysis issue discussing this: MDAnalysis/mdanalysis#5089