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<code>GufeTokenizable</code>s cannot contain a dictionary with other <code>GufeTokenizable</code>s as keys

bugSomething isn't workingSomething isn't working

module-tokenization

Status: Open.

#714 In OpenFreeEnergy/gufe;

· ianmkenney opened on Jan 23, 2026

Direct serialization of <code>GufeTokenizable</code> attributes holding <code>GufeKey</code> instances produces false round tripping

module-tokenization

serialization

Status: Open.

#713 In OpenFreeEnergy/gufe;

· ianmkenney opened on Jan 22, 2026

<code>GufeTokenizable</code> definitions containing other <code>GufeTokenizable</code> objects inside a <code>tuple</code> produces confusing exception

Status: Open.

#711 In OpenFreeEnergy/gufe;

· ianmkenney opened on Jan 16, 2026

refactor <code>HAS_PY3DMOL</code> into top level conftest.py

Status: Open.

#707 In OpenFreeEnergy/gufe;

· mikemhenry opened on Jan 13, 2026

CONECT records cannot be parsed for systems with &gt;100k atoms

Status: Open.

#702 In OpenFreeEnergy/gufe;

· hannahbaumann opened on Jan 7, 2026

Modernize <code>pytest</code> temporary directory handling

Status: Open.

#698 In OpenFreeEnergy/gufe;

· ethanholz opened on Dec 19, 2025

update PdbxContainers.py

Status: Open.

#697 In OpenFreeEnergy/gufe;

· atravitz opened on Dec 19, 2025

Add documentation to newly implemented <code>Context</code> class and <code>StorageManager</code>

Status: Open.

#695 In OpenFreeEnergy/gufe;

· ethanholz opened on Dec 19, 2025

add viz functionality to <code>ExplicitMoleculeComponent</code>

Status: Open.

#692 In OpenFreeEnergy/gufe;

· atravitz opened on Dec 11, 2025

Add a context manager to execute_DAG and <code>gufe</code>'s <code>Context</code> class

Status: Open.

#689 In OpenFreeEnergy/gufe;

· ethanholz opened on Dec 5, 2025

Update documentation on deduplication to disk

Status: Open.

#688 In OpenFreeEnergy/gufe;

· ethanholz opened on Dec 5, 2025

[Discussions] How we define endstates

Status: Open.

#686 In OpenFreeEnergy/gufe;

· IAlibay opened on Dec 1, 2025