build: add presets.json to Docker and Windows deployments

Include presets.json in all deployment configurations:
- Dockerfile (full OpenMS build)
- Dockerfile_simple (pyopenms-only build)
- Windows PyInstaller workflow
- Windows deployment documentation

https://claude.ai/code/session_01BnipAqTf16J7kJVfnzah2U

Author: claude

.github/workflows/test-win-exe-w-pyinstaller.yaml

@@ -68,13 +68,14 @@ jobs:
 
     - name: Copy everything to dist directory
       shell: bash
-      run: | 
+      run: |
         cp -r .streamlit dist/.streamlit
         cp -r content dist/content
         cp -r src dist/src
         cp -r example-data dist/example-data
         cp -r assets dist/assets
         cp app.py dist/
+        cp presets.json dist/
 
     - name: Modify .spec file
       shell: bash

Dockerfile

@@ -141,6 +141,7 @@ COPY utils/ /app/utils
 COPY app.py /app/app.py
 COPY settings.json /app/settings.json
 COPY default-parameters.json /app/default-parameters.json
+COPY presets.json /app/presets.json
 
 # For streamlit configuration
 COPY .streamlit/ /app/.streamlit/

Dockerfile_simple

@@ -74,6 +74,7 @@ COPY utils/ /app/utils
 COPY app.py /app/app.py
 COPY settings.json /app/settings.json
 COPY default-parameters.json /app/default-parameters.json
+COPY presets.json /app/presets.json
 
 # For streamlit configuration
 COPY .streamlit/ /app/.streamlit/

docs/win_exe_with_pyinstaller.md

@@ -102,7 +102,7 @@ cp -r pages dist/pages
 cp -r src dist/src
 cp -r assets dist/assets
 cp app.py dist/
-
+cp presets.json dist/
 ```