Fix the documentation issue #174

app.py

@@ -1,9 +1,11 @@
 import streamlit as st
 from pathlib import Path
+
 import json
 # For some reason the windows version only works if this is imported here
 import pyopenms
 
+
 if "settings" not in st.session_state:
         with open("settings.json", "r") as f:
             st.session_state.settings = json.load(f)

docs/toppframework.py

@@ -36,7 +36,7 @@ def content():
 
 The file `content/6_TOPP-Workflow.py` displays the workflow content and can, but does not have to be modified.
 
-The `Workflow` class contains four important members, which you can use to build your own workflow:
+The `Workflow` class contains five important members, which you can use to build your own workflow:
 
 > **`self.params`:** dictionary of parameters stored in a JSON file in the workflow directory. Parameter handling is done automatically. Default values are defined in input widgets and non-default values are stored in the JSON file.
 

docs/user_guide.md

@@ -18,12 +18,16 @@ In the OpenMS web application, workspaces are designed to keep your analysis org
 ## Online and Local Mode Differences
 
 There are a few key differences between operating in online and local modes:
+
 - **File Uploads**:
   - *Online Mode*: You can upload only one file at a time. This helps manage server load and optimizes performance.
   - *Local Mode*: Multiple file uploads are supported, giving you flexibility when working with large datasets.
+
 - **Workspace Access**:
-  - In online mode, workspaces are stored temporarily and will be cleared after seven days of inactivity.
-  - In local mode, workspaces are saved on your local machine, allowing for persistent storage. Workspace directory can be specified in the `settings.json`. Defaults to `..` (parent directory).
+  - *Online Mode*: Workspaces would be temporarily stored and cleared after seven days of inactivity.
+  - *Local Mode*: Workspaces are saved on your local machine, allowing for persistent storage.  
+    - The workspace directory can be specified in `settings.json`.  
+    - Defaults to `..` (parent directory).
 
 ## Downloading Results
 

docs/win_exe_with_pyinstaller.md

@@ -22,6 +22,11 @@ pip install -r requirements.txt
 
 #install pyinstaller
 pip install pyinstaller
+
+#Verify the correct Python environment is activated 
+echo "Python Executable: $(which python)"
+#⚠ If the output does not show the virtual environment path, activate it first.
+
 ```
 
 ### streamlit files