A command line tool for processing genome scaffolds defined by the genome scaffolder API.
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Output scaffold to fasta format.
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Test inserts do not overlap in the scaffold.
Ruby and RubyGems are required to use scaffolder. Scaffolder tools is installed on the command line using:
$ gem install scaffolder-tools
Command line usage can be found by running the following:
$ scaffolder help
A unix man page is available for each scaffolder command by typing:
$ scaffolder help COMMAND
Scaffolder was developed by Michael Barton (www.michaelbarton.me.uk). The website for scaffolder is at next.gs and a twitter feed for updates is available. There is a Google group for questions and comments. The source code is available on github. Bug reports and feature requests may also be made there.
Scaffolder © 2010 by Michael Barton. Scaffolder is licensed under the MIT license. Please see the LICENSE document for more information.