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Regenerated nml #53

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283a3d1
Regenerated nml
pgleeson Aug 19, 2023
44defc7
Regenerated with latest nml; using latest RateBased.xml from WilsonCowan
pgleeson Sep 25, 2023
5c388fb
Merge pull request #54 from OpenSourceBrain/master
pgleeson Dec 15, 2023
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4 changes: 2 additions & 2 deletions .github/workflows/non-omv.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -17,10 +17,10 @@ jobs:
python-version: [ 3.7, 3.9 ]

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}

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4 changes: 2 additions & 2 deletions .github/workflows/omv-ci.yml
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Expand Up @@ -18,10 +18,10 @@ jobs:
engine: [ jNeuroML, jNeuroML_NEURON, Brian2 ]

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}

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2 changes: 1 addition & 1 deletion NeuroML2/GenerateNetwork.py
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Expand Up @@ -85,7 +85,7 @@ def generate(wee = 1.5, wei = -3.25, wie = 3.5, wii = -2.5, interlaminar1=0,
if not tgt in all_tgts: #and 'V' in tgt and 'V' in src:
all_tgts.append(tgt)

print all_tgts
print(all_tgts)
print(len(all_tgts))

f = open('Neuron_2015_Table.csv')
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6 changes: 3 additions & 3 deletions NeuroML2/Interareal.json
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"Interareal": {
"version": "NeuroMLlite v0.5.3",
"version": "NeuroMLlite v0.5.8",
"notes": "Testing...",
"parameters": {
"wee": 1.5,
Expand Down Expand Up @@ -490,12 +490,12 @@
"modulation_V1_L23_E": {
"input_source": "iclamp_V1_L23",
"population": "V1_L23_E",
"percentage": 100.0
"percentage": 100
},
"modulation_V1_L56_E": {
"input_source": "iclamp_V1_L56",
"population": "V1_L56_E",
"percentage": 100.0
"percentage": 100
}
}
}
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18 changes: 9 additions & 9 deletions NeuroML2/Interareal.net.nml
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="Interareal">
<notes>Generated by NeuroMLlite v0.5.3
<notes>Generated by NeuroMLlite v0.5.8
Generated network: Interareal
Generation seed: 1234
NeuroMLlite parameters:
Expand Down Expand Up @@ -60,63 +60,63 @@
<property tag="radius" value="0.5"/>
<property tag="region" value="V1_L23"/>
<instance id="0">
<location x="0." y="7.333333333333334" z="0."/>
<location x="0.0" y="7.333333333333334" z="0.0"/>
</instance>
</population>
<population id="V1_L23_I" component="L23_I_comp" size="1" type="populationList">
<property tag="color" value="0 0 .8"/>
<property tag="radius" value="0.35"/>
<property tag="region" value="V1_L23"/>
<instance id="0">
<location x="5." y="6.666666666666667" z="0."/>
<location x="5.0" y="6.666666666666667" z="0.0"/>
</instance>
</population>
<population id="V1_L56_E" component="L56_E_comp" size="1" type="populationList">
<property tag="color" value="1 .2 0"/>
<property tag="radius" value="0.6"/>
<property tag="region" value="V1_L56"/>
<instance id="0">
<location x="0." y="2.333333333333333" z="0."/>
<location x="0.0" y="2.333333333333333" z="0.0"/>
</instance>
</population>
<population id="V1_L56_I" component="L56_I_comp" size="1" type="populationList">
<property tag="color" value="0 .2 1"/>
<property tag="radius" value="0.35"/>
<property tag="region" value="V1_L56"/>
<instance id="0">
<location x="5." y="1.666666666666667" z="0."/>
<location x="5.0" y="1.666666666666667" z="0.0"/>
</instance>
</population>
<population id="V4_L23_E" component="L23_E_comp" size="1" type="populationList">
<property tag="color" value=".8 0 0"/>
<property tag="radius" value="0.5"/>
<property tag="region" value="V4_L23"/>
<instance id="0">
<location x="15." y="7.333333333333334" z="0."/>
<location x="15.0" y="7.333333333333334" z="0.0"/>
</instance>
</population>
<population id="V4_L23_I" component="L23_I_comp" size="1" type="populationList">
<property tag="color" value="0 0 .8"/>
<property tag="radius" value="0.35"/>
<property tag="region" value="V4_L23"/>
<instance id="0">
<location x="20." y="6.666666666666667" z="0."/>
<location x="20.0" y="6.666666666666667" z="0.0"/>
</instance>
</population>
<population id="V4_L56_E" component="L56_E_comp" size="1" type="populationList">
<property tag="color" value="1 .2 0"/>
<property tag="radius" value="0.6"/>
<property tag="region" value="V4_L56"/>
<instance id="0">
<location x="15." y="2.333333333333333" z="0."/>
<location x="15.0" y="2.333333333333333" z="0.0"/>
</instance>
</population>
<population id="V4_L56_I" component="L56_I_comp" size="1" type="populationList">
<property tag="color" value="0 .2 1"/>
<property tag="radius" value="0.35"/>
<property tag="region" value="V4_L56"/>
<instance id="0">
<location x="20." y="1.666666666666667" z="0."/>
<location x="20.0" y="1.666666666666667" z="0.0"/>
</instance>
</population>
<continuousProjection id="proj_V1_L23_E_V1_L23_E" presynapticPopulation="V1_L23_E" postsynapticPopulation="V1_L23_E">
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