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Merged
pgleeson merged 5 commits into from
Jun 10, 2025
Merged

To v0.3.7; unpin numpy; limit cython<3.1.0 for nest build #137

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940843a
feat(deps): drop numpy pin to v<2.0
sanjayankur31 Jun 9, 2025
fa2d622
Merge pull request #135 from sanjayankur31/feat-numpy-bump
sanjayankur31 Jun 9, 2025
f378d1f
Update README.md
pgleeson Jun 10, 2025
52664c2
Use min brian 2.7.1
pgleeson Jun 10, 2025
592658f
To v0.3.7
pgleeson Jun 10, 2025
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4 changes: 2 additions & 2 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ jobs:
python-version: [ "3.10" ]
engine:
- Arbor
- "Brian2:2.4"
- "Brian2:2.9.0"
- Brian2
- EDEN
- "NEST:3.3"
Expand Down Expand Up @@ -63,7 +63,7 @@ jobs:
- name: Install OMV
run: |
pip install .
pip install scipy sympy matplotlib cython pandas tables
pip install scipy sympy matplotlib "cython<3.1.0" pandas tables
#sudo apt install octave
sudo apt-get install -y subversion # for neuroConstruct full install...

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4 changes: 2 additions & 2 deletions .github/workflows/ci_versions.yml
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Expand Up @@ -17,7 +17,7 @@ jobs:
runs-on: [ubuntu-latest, macos-latest, ubuntu-24.04 ]
exclude:
- runs-on: macos-latest
python-version: "3.9"
python-version: ["3.9"]

steps:
- uses: actions/checkout@v4
Expand Down Expand Up @@ -50,4 +50,4 @@ jobs:
run: |
omv list -V # list installed engines
env
pip list
pip list
1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -157,3 +157,4 @@ Since you can run the validation with different [engines](https://github.com/Ope
### Running tests automatically on GitHub Actions

To use OMV with GHA, copy an existing configuration file, e.g. https://github.com/OpenSourceBrain/ACnet2/blob/master/.github/workflows/omv-ci.yml and place it in the required repository.

2 changes: 1 addition & 1 deletion omv/engines/getbrian2.py
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Expand Up @@ -5,7 +5,7 @@

def install_brian2(version):
if not version:
version = "2.5.3"
version = "2.7.1"
try:
pip_install("brian2", version)
import brian2
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7 changes: 3 additions & 4 deletions setup.cfg
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@@ -1,6 +1,6 @@
[metadata]
name = OSBModelValidation
version = 0.3.6
version = 0.3.7
author = Boris Marin, Padraig Gleeson
author_email = [email protected]
url = https://github.com/OpenSourceBrain/osb-model-validation
Expand All @@ -13,18 +13,17 @@ classifiers=
License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
Natural Language :: English
Operating System :: OS Independent
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
Programming Language :: Python :: 3.13
Topic :: Scientific/Engineering

[options]
install_requires =
PyYAML
numpy<2.0.0 # Due to other packages (e.g. tables) not working yet with numpy v2
numpy
pyrx
pathlib; python_version<'3.4'
docopt
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