This repository includes code for simulation and analysis of optically evoked postsynaptic neuronal responses following sequential and patterned optical stimulation of presynaptic neurons. The results of this repository have been reported in details in the following paper

Compressive sensing of functional connectivity maps from patterned optogenetic stimulation of neuronal ensembles
Navarro, Phillip et al.
Patterns, Volume 4, Issue 10, 100845

https://www.cell.com/patterns/fulltext/S2666-3899(23)00224-6

These results have been further validated and reproduced in a subsequent experimental study

High-throughput synaptic connectivity mapping using in vivo two-photon holographic optogenetics and compressive sensing Chen et al. Nature Neuroscience, 2025 DOI: 10.1038/s41593-025-02024-y