Next development iteration v0.9.10.dev0.

Author: ielis

docs/conf.py

@@ -3,6 +3,9 @@
 import os
 import sys
 
+src_dir = os.path.abspath(os.path.join('..', 'src'))
+sys.path.insert(0, src_dir)
+import gpsea
 
 # -- General configuration ------------------------------------------------
 
@@ -16,8 +19,6 @@
 # -- General configuration ---------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
 
-src_dir = os.path.abspath(os.path.join('..', 'src'))
-sys.path.insert(0, src_dir)
 extensions = [
     'sphinx.ext.autodoc',
     'sphinx.ext.autosummary',
@@ -62,9 +63,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'0.9'
+#version = u''
 # The full version, including alpha/beta/rc tags.
-release = u'0.9.9-dev0'
+release = gpsea.__version__
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
@@ -207,8 +208,10 @@
     "python": ("https://docs.python.org/3/", None),
     "hpotk": ("https://ielis.github.io/hpo-toolkit/stable/", None),
     "pandas": ("https://pandas.pydata.org/pandas-docs/version/2.0.0/", None),
+    "phenopacket-store-toolkit": ("https://monarch-initiative.github.io/phenopacket-store-toolkit/stable/", None),
     "requests": ("https://docs.python-requests.org/en/stable/", None),
     "scipy": ("https://docs.scipy.org/doc/scipy-1.11.0/", None),
+    "stairval": ("https://ielis.github.io/stairval/stable/", None),
     "statsmodels": ("https://www.statsmodels.org/stable/", None),
     "numpy": ("https://numpy.org/doc/stable/", None),
 }

src/gpsea/__init__.py

@@ -2,7 +2,7 @@
 GPSEA is a library for finding genotype-phenotype associations.
 """
 
-__version__ = "0.9.9"
+__version__ = "0.9.10.dev0"
 
 _overwrite = False
 """