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Plot without vis spec without ids_per_plot #386

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Merged
PaulJonasJost merged 2 commits into from
May 7, 2025
Merged

Plot without vis spec without ids_per_plot #386

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86f6fb3
If not providing "ids_per_plot" it automatically assumes that "groupy…
PaulJonasJost May 7, 2025
9fa9045
Update petab/v1/visualize/plotting.py
PaulJonasJost May 7, 2025
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10 changes: 8 additions & 2 deletions petab/v1/visualize/plotting.py
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Original file line number Diff line number Diff line change
Expand Up @@ -861,8 +861,14 @@ def parse_from_id_list(
"""
if ids_per_plot is None:
# this is the default case. If no grouping is specified,
# all observables are plotted. One observable per plot.
unique_obs_list = self._data_df[OBSERVABLE_ID].unique()
# each group_by category will be plotted on a separate plot
unique_obs_list = self._data_df[
{
"dataset": DATASET_ID,
"observable": OBSERVABLE_ID,
"simulation": SIMULATION_CONDITION_ID,
}[group_by]
].unique()
ids_per_plot = [[obs_id] for obs_id in unique_obs_list]

if group_by == "dataset" and DATASET_ID not in self._data_df:
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