v0.12.2

Bug fixes to some of the GATK tools (and corresponding subworkflows & workflows) following testing with nextflow translations

v0.12.1

• Added new bioinformatics tools for RNASeq Fusion Pipelines
• Fixed bugs for some of the older tools
• Upgraded dependencies to Python3.10
• Modified tools to support Janis -> Nextflow translation

v0.11.3

• Added new tools, including:
  • MultiQC
  • RNASeQC
• Minor fixes to a few janis commandlinetools, including:
  • Manta
  • bcftools-concat

Thanks @jiaan-yu

v0.11.1

• add new bcftools fill-from-fasta
• generate manta config

Unit testing + additional tools

This release brings a lot of new functionality related to testing:

• Test basic metadata about all tools
• Add unit tests (w/ data) to bioinformatics tools

Janis Transformations:

• Teaching janis how to transform bioinformatics types, for example Bam -> BamBai for janis prepare mode

Synchronise bioinformatics tools with new Janis structure

v0.4.0

Add entrypoints for janis.extras + janis.core bundling