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feature: Added severus 1.6 container #123

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feature: Added severus 1.6 container #123

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23 changes: 23 additions & 0 deletions docker/severus/Dockerfile
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Original file line number Diff line number Diff line change
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FROM mambaorg/micromamba:2.5.0
LABEL maintainer="Zev Kronenberg <zkronenberg@pacb.com>"

ARG IMAGE_NAME
ENV IMAGE_NAME "${IMAGE_NAME}"
ARG IMAGE_TAG
ENV IMAGE_TAG "${IMAGE_TAG}"

ARG SEVERUS_VERSION
ARG HTSLIB_VERSION
ARG BCFTOOLS_VERSION
ARG SAMTOOLS_VERSION
RUN micromamba create --yes \
--name severus \
--channel defaults \
--channel bioconda \
--channel conda-forge \
severus=${SEVERUS_VERSION} \
wget bcftools=${BCFTOOLS_VERSION} \
samtools=${SAMTOOLS_VERSION} \
htslib=${HTSLIB_VERSION} \
&& micromamba env export --name severus --explicit \
&& micromamba clean --all --yes
12 changes: 12 additions & 0 deletions docker/severus/build.env
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Original file line number Diff line number Diff line change
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# Image revision
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@zeeev zeeev Feb 4, 2026

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LGTM

IMAGE_BUILD=1

# Tool versions
SEVERUS_VERSION=1.6
HTSLIB_VERSION=1.20
BCFTOOLS_VERSION=1.20
SAMTOOLS_VERSION=1.20

# Image info
IMAGE_NAME=severus
IMAGE_TAG=${SEVERUS_VERSION}_build${IMAGE_BUILD}