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Version 2.5.0, used in TargetEnrichment, does not add the SOURCE field to the RG for segmented reads; this is fixed in v2.7.1.
Handles Revio data
Singularity runs as non-root
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samtools/isoseq and samtools/humanwgs are the same, except for version. We could probably get away with a single image to support both. We just need to test the new version within the context of wdl-humanwgs.
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As far as I can tell, the difference between lima/isoseq and lima/targetenrichment is just lima version. 2.5 vs 2.7. Maybe worth checking whether the newest is compatible with both?
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Images used by the IsoSeq pipeline