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US-6.4.2: CLI polysim init command

epic:cliCLI commands & UXCLI commands & UX

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P2Nice-to-have — can be deferredNice-to-have — can be deferred

Status: Open.

#89 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.4.1: CLI polysim run command

epic:cliCLI commands & UXCLI commands & UX

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P1Important — high valueImportant — high value

Status: Open.

#88 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.3.3: Contributing guide and benchmark suite

epic:docsEpic 6.3: DocumentationEpic 6.3: Documentation

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P2Nice-to-have — can be deferredNice-to-have — can be deferred

Status: Open.

#87 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.3.2: Exhaustive API documentation with examples

epic:docsEpic 6.3: DocumentationEpic 6.3: Documentation

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P1Important — high valueImportant — high value

Status: Open.

#86 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.3.1: Step-by-step tutorials

epic:docsEpic 6.3: DocumentationEpic 6.3: Documentation

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P1Important — high valueImportant — high value

Status: Open.

#85 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.2.2: Python bindings for MD simulation

epic:pythonEpic 6.2: Python bindingsEpic 6.2: Python bindings

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P2Nice-to-have — can be deferredNice-to-have — can be deferred

Status: Open.

#84 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.2.1: Python bindings for structures and properties (PyO3)

epic:pythonEpic 6.2: Python bindingsEpic 6.2: Python bindings

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P1Important — high valueImportant — high value

Status: Open.

#83 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.1.3: SIMD vectorization for pair forces

epic:performanceEpic 6.1: PerformanceEpic 6.1: Performance

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P2Nice-to-have — can be deferredNice-to-have — can be deferred

Status: Open.

#82 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.1.2: Optimized neighbor lists (cell list + Verlet list)

epic:performanceEpic 6.1: PerformanceEpic 6.1: Performance

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P0Critical — must-have for the phaseCritical — must-have for the phase

Status: Open.

#81 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-6.1.1: Rayon shared-memory parallelism

epic:performanceEpic 6.1: PerformanceEpic 6.1: Performance

phase:6Phase 6: Ecosystem (v2.5+)Phase 6: Ecosystem (v2.5+)

priority:P0Critical — must-have for the phaseCritical — must-have for the phase

Status: Open.

#80 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 6: Ecosystem (v2.5+)

US-5.5.2: Desktop app — real-time simulation monitoring

epic:desktopEpic 3.4: Desktop applicationEpic 3.4: Desktop application

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P2Nice-to-have — can be deferredNice-to-have — can be deferred

Status: Open.

#79 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 5: Analysis (v2.1+)

US-5.5.1: Desktop app — analysis visualization

epic:desktopEpic 3.4: Desktop applicationEpic 3.4: Desktop application

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P1Important — high valueImportant — high value

Status: Open.

#78 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

·  

Phase 5: Analysis (v2.1+)