Replace MCFLIRT-based HMC workflow with ANTs-based one#506
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tsalo wants to merge 36 commits intoPennLINC:mainfrom
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Replace MCFLIRT-based HMC workflow with ANTs-based one#506tsalo wants to merge 36 commits intoPennLINC:mainfrom
tsalo wants to merge 36 commits intoPennLINC:mainfrom
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tsalo
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Apr 28, 2025
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| (reference_buffer, register_reference, [('aslref', 'fixed_image')]), | ||
| (inputnode, register_reference, [('raw_ref_image', 'moving_image')]), |
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This is the opposite of what I would expect, but having it swapped produced bad results.
tsalo
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Apr 28, 2025
tsalo
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Apr 28, 2025
tsalo
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I'm currently having trouble making the right associated files (motion parameters file, RMSD file) from the ITK transforms. |
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Closing for now. If mutual information doesn't work, and volume type-specific reference images also doesn't work, then we can revisit this idea (or try NiFreeze). |
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Closes none, but addresses a bug I found. It looks like GE processing was still running HMC.
One remaining problem is that there's no transform from the ASL file to the aslref image.
Changes proposed in this pull request