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Add default value for project_root #194

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Merged
tien-tong merged 6 commits into from
Mar 18, 2025
Merged

Add default value for project_root #194

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7ffd91f
Add default value for project_root
smeisler Mar 17, 2025
b3240a0
Lint, hopefully
smeisler Mar 17, 2025
f125034
ruff formatting
smeisler Mar 17, 2025
c82a1b7
Undo that, why did `ruff format` make it worse???
smeisler Mar 17, 2025
db88799
Merge branch 'main' into enh/default_root
mattcieslak Mar 18, 2025
3361338
ruff quote style
mattcieslak Mar 18, 2025
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45 changes: 30 additions & 15 deletions babs/cli.py
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Original file line number Diff line number Diff line change
Expand Up @@ -300,9 +300,12 @@ def babs_check_setup_cli():
parser.add_argument(
'--project_root',
'--project-root',
help='Absolute path to the root of BABS project.'
" For example, '/path/to/my_BABS_project/'.",
required=True,
help=(
'Absolute path to the root of BABS project. '
"For example, '/path/to/my_BABS_project/' "
'(default is current working directory).'
),
default=os.getcwd(),
)
parser.add_argument(
'--job_test',
Expand Down Expand Up @@ -355,9 +358,12 @@ def babs_submit_cli():
parser.add_argument(
'--project_root',
'--project-root',
help='Absolute path to the root of BABS project.'
" For example, '/path/to/my_BABS_project/'.",
required=True,
help=(
'Absolute path to the root of BABS project. '
"For example, '/path/to/my_BABS_project/' "
'(default is current working directory).'
),
default=os.getcwd(),
)

# --count, --job: can only request one of them
Expand Down Expand Up @@ -502,9 +508,12 @@ def babs_status_cli():
parser.add_argument(
'--project_root',
'--project-root',
help='Absolute path to the root of BABS project.'
" For example, '/path/to/my_BABS_project/'.",
required=True,
help=(
'Absolute path to the root of BABS project. '
"For example, '/path/to/my_BABS_project/' "
'(default is current working directory).'
),
default=os.getcwd(),
)
parser.add_argument(
'--resubmit',
Expand Down Expand Up @@ -736,9 +745,12 @@ def babs_merge_cli():
parser.add_argument(
'--project_root',
'--project-root',
help='Absolute path to the root of BABS project.'
" For example, '/path/to/my_BABS_project/'.",
required=True,
help=(
'Absolute path to the root of BABS project. '
"For example, '/path/to/my_BABS_project/' "
'(default is current working directory).'
),
default=os.getcwd(),
)
parser.add_argument(
'--chunk-size',
Expand Down Expand Up @@ -798,9 +810,12 @@ def babs_unzip_cli():
parser.add_argument(
'--project_root',
'--project-root',
help='Absolute path to the root of BABS project.'
" For example, '/path/to/my_BABS_project/'.",
required=True,
help=(
'Absolute path to the root of BABS project. '
"For example, '/path/to/my_BABS_project/' "
'(default is current working directory).'
),
default=os.getcwd(),
)
parser.add_argument(
'--container_config_yaml_file',
Expand Down