Use datalad containers-run for single-container jobs#347

Draft

asmacdo wants to merge 13 commits intoPennLINC:mainfrom

asmacdo:add-containers-run-v2

Commits on Mar 16, 2026

Improvements for dev testing

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claude
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Write test artifacts to tmp_path instead of repo root

asmacdo
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Write coverage.xml to /tmp instead of repo root

asmacdo
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Discover container image path via containers-list and register at analysis level

asmacdo
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Replace singularity run with datalad containers-run in job template

asmacdo
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claude
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Generate zip-only script instead of singularity+zip

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Include .datalad in sparse-checkout for containers-run

asmacdo
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Use git rm --sparse for output cleanup

asmacdo
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Fix writable check for NFS/ACL filesystems

asmacdo
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claude
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Fetch container image during init for job symlink access

asmacdo
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claude
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Commits on Mar 17, 2026

Commits on Mar 22, 2026

Remove container image fetch from init

asmacdo
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claude
committed