remove reference to pypy in CI GHA and remove deadcode needed for pypy #338
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…hon 3.9 and move all GHA to >=3.11
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Standardized CI with Python >=3.11 and removed consideration of PyPy to reduce GHA and codebase complexity. As Toil still doesn't work with PyPy and PyPy conda package is no longer going to be maintained.
Sunsetting of PyPy on Conda