Isoplexis Data Analysis

Suzette Palmer (Zhan and Koh labs)

Clone Isoplexis Github Repository

git clone https://github.com/suziepalmer10/Isoplexis_Data_Analysis.git

Installation

1. Create a virtual environment:

• On Biohpc:

module add python/3.8.x-anaconda
python -V
conda create -n isoplexis python=3.8.8 ipykernel
conda activate isoplexis

• On Local System (Mac/Linux)

python3 -m venv isoplexis

2. Activate virtual environment

• On Biohpc:

module add python/3.8.x-anaconda
conda activate isoplexis

• On Local System (Mac/Linux)

source isoplexis/bin/activate

3. Update pip and install required libraries

python -m pip install --upgrade pip
python -m pip install -r requirements.txt

4. Start Isoplexis Data Analysis web server

python isoplexis.py