[WIP] Try to have reproducible dependencies for almost everything

.github/workflows/docs_dev.yml

@@ -18,7 +18,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.10'
+        python-version: '3.12'
     - name: Install dependencies
       run: |
         pip install -U --group testinfra

.github/workflows/docs_release.yml

@@ -19,7 +19,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.10'
+        python-version: '3.12'
     - name: Install dependencies
       run: |
         pip install -U --group testinfra

.github/workflows/main.yml

@@ -25,7 +25,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
-          python-version: "3.10"
+          python-version: "3.12"
       - run: |
           pip install -U --group lint
       - uses: dtolnay/rust-toolchain@stable
@@ -38,9 +38,9 @@ jobs:
       - name: Clippy
         run: cargo clippy --workspace --all-targets -- -D warnings
       - name: Black Codestyle Format
-        run: black --check --diff rustworkx tests retworkx
+        run: black --check --diff rustworkx tests
       - name: Python Lint
-        run: ruff check rustworkx setup.py tests retworkx
+        run: ruff check rustworkx setup.py tests
       - name: Check stray release notes
         run: python tools/find_stray_release_notes.py
       - name: rustworkx-core Rust Tests
@@ -61,7 +61,7 @@ jobs:
     strategy:
       matrix:
         rust: [stable]
-        python-version: [3.9, "3.10", "3.11", "3.12", "3.13"]
+        python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
         platform: [
           { os: "macOS-13", python-architecture: "x64", rust-target: "x86_64-apple-darwin" },
           { os: "macOS-14", python-architecture: "arm64", rust-target: "aarch64-apple-darwin" },
@@ -70,20 +70,16 @@ jobs:
           { os: "windows-latest", python-architecture: "x64", rust-target: "x86_64-pc-windows-msvc" },
         ]
         include:
-          # Test ARM + minimal supported Rust version
+          # Test minimal supported Rust version
           - rust: 1.85.1
-            python-version: "3.10"
+            python-version: "3.12"
             platform: { os: "ubuntu-latest", python-architecture: "x64", rust-target: "x86_64-unknown-linux-gnu" }
             msrv: "MSRV"
-          # Test ARM + future versions of Rust and Python
+          # Test future versions of Rust and Python
           - rust: beta
-            python-version: "3.13" # upgrade to 3.14-dev when the release candidate is available
+            python-version: "3.14" # upgrade to 3.15-dev when the release candidate is available
             platform: { os: "ubuntu-latest", python-architecture: "x64", rust-target: "x86_64-unknown-linux-gnu" }
             msrv: "Beta"
-        # Exclude python 3.9 on arm64 until actions/setup-python#808 is resolved
-        exclude:
-          - platform: {os: "macOS-14", python-architecture: "arm64", rust-target: "aarch64-apple-darwin" }
-            python-version: 3.9
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
@@ -112,7 +108,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.9, "3.10", "3.11", "3.12", "3.13"]
+        python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
@@ -137,7 +133,7 @@ jobs:
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v5
         with:
-          python-version: "3.10"
+          python-version: "3.12"
       - name: Install Rust toolchain
         uses: dtolnay/rust-toolchain@stable
         with:
@@ -185,7 +181,7 @@ jobs:
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v5
         with:
-          python-version: "3.10"
+          python-version: "3.12"
       - name: Install Rust toolchain
         uses: dtolnay/rust-toolchain@stable
       - name: Install binary deps

.github/workflows/wheels.yml

@@ -29,7 +29,7 @@ jobs:
       - uses: actions/setup-python@v5
         name: Install Python
         with:
-          python-version: '3.10'
+          python-version: '3.12'
       - name: Install deps
         run: pip install -U setuptools-rust build
       - name: Build sdist
@@ -53,7 +53,7 @@ jobs:
       - uses: actions/setup-python@v5
         name: Install Python
         with:
-          python-version: '3.10'
+          python-version: '3.12'
       - uses: dtolnay/rust-toolchain@stable
       - name: Install cibuildwheel
         run: |
@@ -97,7 +97,7 @@ jobs:
       - uses: actions/setup-python@v5
         name: Install Python
         with:
-          python-version: '3.10'
+          python-version: '3.12'
       - uses: dtolnay/rust-toolchain@stable
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v2
@@ -110,7 +110,7 @@ jobs:
         run: |
           python -m cibuildwheel --output-dir wheelhouse
         env:
-          CIBW_SKIP: cp36-* cp37-* pp* *win32 *musl*
+          CIBW_SKIP: pp* cp314t* *win32 *musl*
           CIBW_ARCHS_LINUX: ppc64le
       - uses: actions/upload-artifact@v4
         with:
@@ -135,7 +135,7 @@ jobs:
       - uses: actions/setup-python@v5
         name: Install Python
         with:
-          python-version: '3.10'
+          python-version: '3.12'
       - uses: dtolnay/rust-toolchain@stable
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v2
@@ -148,7 +148,7 @@ jobs:
         run: |
           python -m cibuildwheel --output-dir wheelhouse
         env:
-          CIBW_SKIP: cp36-* cp37-* pp* *win32 *musl*
+          CIBW_SKIP: pp* cp314t* *win32 *musl*
           CIBW_ARCHS_LINUX: s390x
       - uses: actions/upload-artifact@v4
         with:
@@ -167,7 +167,7 @@ jobs:
       - uses: actions/setup-python@v5
         name: Install Python
         with:
-          python-version: '3.10'
+          python-version: '3.12'
           architecture: 'x86'
       - uses: dtolnay/rust-toolchain@stable
         with:
@@ -181,31 +181,8 @@ jobs:
         run: |
           python -m cibuildwheel --output-dir wheelhouse
         env:
-          CIBW_SKIP: cp36-* cp37-* pp* *amd64 *musl*
+          CIBW_SKIP: pp* cp314t* *amd64 *musl*
       - uses: actions/upload-artifact@v4
         with:
           path: ./wheelhouse/*.whl
           name: shared-wheel-builds-win32
-  retworkx-compat-build:
-    name: Build retworkx
-    runs-on: ubuntu-latest
-    environment: release
-    permissions:
-      id-token: write
-    needs: ["upload_shared_wheels"]
-    steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
-        name: Install Python
-        with:
-          python-version: '3.10'
-      - name: Install deps
-        run: pip install -U setuptools-rust wheel build
-      - name: Build sdist
-        run: pushd retworkx && python setup.py bdist_wheel && popd
-      - uses: actions/upload-artifact@v4
-        with:
-          path: ./retworkx/dist/*
-          name: sdist-retworkx
-      - name: Publish package distributions to PyPI
-        uses: pypa/gh-action-pypi-publish@release/v1

Cargo.toml

@@ -70,7 +70,7 @@ nalgebra-sparse = { version = "=0.10", features = ["io"] }
 
 [dependencies.pyo3]
 version = "0.26"
-features = ["abi3-py39", "extension-module", "hashbrown", "num-bigint", "num-complex", "indexmap", "py-clone"]
+features = ["abi3-py310", "extension-module", "hashbrown", "num-bigint", "num-complex", "indexmap", "py-clone"]
 
 [dependencies.sprs]
 version = "^0.11"

docs/source/tutorial/introduction.rst

@@ -399,9 +399,9 @@ operations on the graph. For example:
 
 .. jupyter-execute::
 
-    lolipop_graph = rx.generators.lollipop_graph(4, 3)
+    lollipop_graph = rx.generators.lollipop_graph(4, 3)
     mesh_graph = rx.generators.mesh_graph(4)
-    combined_graph = rx.cartesian_product(lolipop_graph, mesh_graph)[0]
+    combined_graph = rx.cartesian_product(lollipop_graph, mesh_graph)[0]
     mpl_draw(combined_graph)
 
 Additionally there are alternate constructors such as

noxfile.py

@@ -2,16 +2,21 @@
 
 nox.options.reuse_existing_virtualenvs = True
 nox.options.stop_on_first_error = True
+nox.options.download_python = 'never'
 
 pyproject = nox.project.load_toml("pyproject.toml")
 
 deps = nox.project.dependency_groups(pyproject, "test")
 lint_deps = nox.project.dependency_groups(pyproject, "lint")
 stubs_deps = nox.project.dependency_groups(pyproject, "stubs")
 
+requires_python = pyproject["project"]["requires-python"]
+supported_python_versions = nox.project.python_versions(pyproject)
+min_python_version = min(supported_python_versions)
+
 def install_rustworkx(session):
     session.install(*deps)
-    session.install(".[all]", "-c", "constraints.txt")
+    session.install(".[all]")
 
 # We define a common base such that -e test triggers a test with the current
 # Python version of the interpreter and -e test_with_version launches
@@ -25,7 +30,7 @@ def base_test(session):
 def test(session):
     base_test(session)
 
-@nox.session(python=["3.9", "3.10", "3.11", "3.12"])
+@nox.session(python=["3.10", "3.11", "3.12", "3.13"])
 def test_with_version(session):
     base_test(session)
 
@@ -34,7 +39,7 @@ def lint(session):
     black(session)
     typos(session)
     session.install(*lint_deps)
-    session.run("ruff", "check", "rustworkx", "retworkx", "setup.py")
+    session.run("ruff", "check", "rustworkx", "setup.py")
     session.run("cargo", "fmt", "--all", "--", "--check", external=True)
     session.run("python", "tools/find_stray_release_notes.py")
 
@@ -74,7 +79,7 @@ def docs_clean(session):
 @nox.session(python=["3"])
 def black(session):
     session.install(*[d for d in lint_deps if "black" in d])
-    session.run("black", "rustworkx", "tests", "retworkx", *session.posargs)
+    session.run("black", "rustworkx", "tests", *session.posargs)
 
 @nox.session(python=["3"])
 def typos(session):
@@ -87,4 +92,44 @@ def stubs(session):
     install_rustworkx(session)
     session.install(*stubs_deps)
     session.chdir("tests")
-    session.run("python", "-m", "mypy.stubtest", "--concise", "rustworkx")
+    session.run("python", "-m", "mypy.stubtest", "--concise", "rustworkx", "--allowlist", "stubs_allowlist.txt")
+
+@nox.session(
+    python=["3"], 
+    venv_backend="uv", 
+    reuse_venv=False,
+    default=False, 
+)
+def compile_locks(session):    
+    from pathlib import Path
+    print("Supported Python versions:", supported_python_versions)
+
+    dependency_groups = pyproject.get("dependency-groups")
+
+    # Ensure requirements directory exists
+    requirements_dir = Path("requirements")
+    requirements_dir.mkdir(exist_ok=True)
+
+    # Process each dependency group
+    for group_name in dependency_groups.keys():
+        session.log(f"Compiling dependency group: {group_name}")
+
+        group_dir = requirements_dir / group_name
+        group_dir.mkdir(exist_ok=True)        
+        output_file = group_dir / "pylock.toml"
+
+        # Compile lockfile
+        uv_python = f"python{min_python_version}"
+        session.run(
+            "uv",
+            "pip",
+            "compile",
+            "--python",
+            uv_python,
+            "--group",
+            group_name,
+            "-o",
+            str(output_file),
+        )
+
+        session.log(f"✓ Created {output_file}")