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Vicbeg wants to merge 56 commits intomasterfrom

Commits on Feb 19, 2026

Commits on Feb 23, 2026

Add umitools and update
Vicbeg
committed

Commits on Feb 24, 2026

Add samtools and umitools implementation
Vicbeg
committed

Commits on Feb 27, 2026

Commits on Mar 2, 2026

Add options for rf-norm and run MultiQC before
Vicbeg
committed

Commits on Mar 3, 2026

Added cat fastq to handle resequencing of samples
Vicbeg
committed

Commits on Mar 4, 2026

Remove duplicates properly
Vicbeg
committed

Commits on Mar 5, 2026

wired in rf-fold, tests and update docs
Vicbeg
committed

Commits on Mar 7, 2026

Switched to using transcriptome and fixed tests
Vicbeg
committed

Commits on Mar 8, 2026

Fixed remaining issues with transcript fasta use
Vicbeg
committed

Commits on Mar 9, 2026

Commits on Mar 13, 2026

Commits on Mar 15, 2026

Fixing linting issues
Vicbeg
committed

Commits on Mar 16, 2026