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Fix v35 participant PHV regression in FHS-ingest #364

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Merged
amc-corey-cox merged 1 commit into from
Feb 26, 2026
Merged

Fix v35 participant PHV regression in FHS-ingest #364

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4 changes: 2 additions & 2 deletions priority_variables_transform/FHS-ingest/afib.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -469,9 +469,9 @@
populated_from: pht006018
slot_derivations:
associated_participant:
populated_from: phv00276845
populated_from: phv00276803
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00276845}) + ":" + case(({phv00276845} == ''0'', ''FHS ORIGINAL CHF''), ({phv00276845} == ''1'', ''FHS OFFSPRING CHF''), ({phv00276845} == ''2'', ''FHS NEW OFFSPRING CHF''), ({phv00276845} == ''3'', ''FHS GENERATION 3 CHF''), ({phv00276845} == ''7'', ''FHS OMNI 1 CHF''), ({phv00276845} == ''72'', ''FHS OMNI 2 CHF'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00276803}) + ":" + case(({phv00276845} == ''0'', ''FHS ORIGINAL CHF''), ({phv00276845} == ''1'', ''FHS OFFSPRING CHF''), ({phv00276845} == ''2'', ''FHS NEW OFFSPRING CHF''), ({phv00276845} == ''3'', ''FHS GENERATION 3 CHF''), ({phv00276845} == ''7'', ''FHS OMNI 1 CHF''), ({phv00276845} == ''72'', ''FHS OMNI 2 CHF'')))'
condition_concept:
value: MONDO:0004981
range: string
Expand Down
8 changes: 4 additions & 4 deletions priority_variables_transform/FHS-ingest/albumin_bld.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -75,9 +75,9 @@
populated_from: pht004802
slot_derivations:
associated_participant:
populated_from: phv00227024
populated_from: phv00227023
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227024}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227023}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
observation_type:
value: OMOP:2212186
range: string
Expand Down Expand Up @@ -123,9 +123,9 @@
populated_from: pht006018
slot_derivations:
associated_participant:
populated_from: phv00276845
populated_from: phv00276803
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00276845}) + ":" + case(({phv00276845} == ''0'', ''FHS ORIGINAL CHF''), ({phv00276845} == ''1'', ''FHS OFFSPRING CHF''), ({phv00276845} == ''2'', ''FHS NEW OFFSPRING CHF''), ({phv00276845} == ''3'', ''FHS GENERATION 3 CHF''), ({phv00276845} == ''7'', ''FHS OMNI 1 CHF''), ({phv00276845} == ''72'', ''FHS OMNI 2 CHF'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00276803}) + ":" + case(({phv00276845} == ''0'', ''FHS ORIGINAL CHF''), ({phv00276845} == ''1'', ''FHS OFFSPRING CHF''), ({phv00276845} == ''2'', ''FHS NEW OFFSPRING CHF''), ({phv00276845} == ''3'', ''FHS GENERATION 3 CHF''), ({phv00276845} == ''7'', ''FHS OMNI 1 CHF''), ({phv00276845} == ''72'', ''FHS OMNI 2 CHF'')))'
observation_type:
value: OMOP:2212186
range: string
Expand Down
4 changes: 2 additions & 2 deletions priority_variables_transform/FHS-ingest/albumin_urine.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -262,9 +262,9 @@
populated_from: pht004802
slot_derivations:
associated_participant:
populated_from: phv00227024
populated_from: phv00227023
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227024}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227023}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
age_at_observation:
expr: case(({phv00227024} == 1, {pht003099.phv00177944} * 365), case({phv00227024} == 7, {pht003099.phv00177936} * 365))
observation_type:
Expand Down
4 changes: 2 additions & 2 deletions priority_variables_transform/FHS-ingest/alt_sgpt.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -66,9 +66,9 @@
populated_from: pht004802
slot_derivations:
associated_participant:
populated_from: phv00227024
populated_from: phv00227023
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227024}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227023}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
age_at_observation:
expr: case(({phv00227024} == 1, {pht003099.phv00177946} * 365), case({phv00227024} == 7, {pht003099.phv00177936} * 365))
observation_type:
Expand Down
4 changes: 2 additions & 2 deletions priority_variables_transform/FHS-ingest/angina.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,9 +3,9 @@
populated_from: pht000395
slot_derivations:
associated_participant:
populated_from: phv00056607
populated_from: phv00056635
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056607}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056635}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
condition_concept:
value: HP:0001681
range: string
Expand Down
8 changes: 4 additions & 4 deletions priority_variables_transform/FHS-ingest/apnea_hypop_index.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,9 +3,9 @@
populated_from: pht000395
slot_derivations:
associated_participant:
populated_from: phv00056607
populated_from: phv00056635
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056607}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056635}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
age_at_observation:
expr: '{phv00056587} * 365'
observation_type:
Expand All @@ -27,9 +27,9 @@
populated_from: pht000395
slot_derivations:
associated_participant:
populated_from: phv00056607
populated_from: phv00056635
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056607}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056635}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
age_at_observation:
expr: '{phv00056587} * 365'
observation_type:
Expand Down
4 changes: 2 additions & 2 deletions priority_variables_transform/FHS-ingest/ast_sgot.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -99,9 +99,9 @@
populated_from: pht004802
slot_derivations:
associated_participant:
populated_from: phv00227024
populated_from: phv00227023
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227024}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227023}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
age_at_observation:
expr: case(({phv00227024} == 1, {pht003099.phv00177946} * 365), case({phv00081047} == 7, {pht003099.phv00177936} * 365))
observation_type:
Expand Down
16 changes: 8 additions & 8 deletions priority_variables_transform/FHS-ingest/asthma.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -1396,9 +1396,9 @@
populated_from: pht000395
slot_derivations:
associated_participant:
populated_from: phv00056607
populated_from: phv00056635
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056607}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056635}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
condition_concept:
value: MONDO:0004979
range: string
Expand Down Expand Up @@ -1670,9 +1670,9 @@
populated_from: pht005140
slot_derivations:
associated_participant:
populated_from: phv00254011
populated_from: phv00254010
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00254011}) + ":" + case(({phv00254011} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00254011} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00254010}) + ":" + case(({phv00254011} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00254011} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
condition_concept:
value: MONDO:0004979
range: string
Expand All @@ -1693,9 +1693,9 @@
populated_from: pht005140
slot_derivations:
associated_participant:
populated_from: phv00254011
populated_from: phv00254010
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00254011}) + ":" + case(({phv00254011} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00254011} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00254010}) + ":" + case(({phv00254011} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00254011} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
condition_concept:
value: MONDO:0004979
range: string
Expand Down Expand Up @@ -1850,9 +1850,9 @@
populated_from: pht006018
slot_derivations:
associated_participant:
populated_from: phv00276845
populated_from: phv00276803
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00276845}) + ":" + case(({phv00276845} == ''0'', ''FHS ORIGINAL CHF''), ({phv00276845} == ''1'', ''FHS OFFSPRING CHF''), ({phv00276845} == ''2'', ''FHS NEW OFFSPRING CHF''), ({phv00276845} == ''3'', ''FHS GENERATION 3 CHF''), ({phv00276845} == ''7'', ''FHS OMNI 1 CHF''), ({phv00276845} == ''72'', ''FHS OMNI 2 CHF'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00276803}) + ":" + case(({phv00276845} == ''0'', ''FHS ORIGINAL CHF''), ({phv00276845} == ''1'', ''FHS OFFSPRING CHF''), ({phv00276845} == ''2'', ''FHS NEW OFFSPRING CHF''), ({phv00276845} == ''3'', ''FHS GENERATION 3 CHF''), ({phv00276845} == ''7'', ''FHS OMNI 1 CHF''), ({phv00276845} == ''72'', ''FHS OMNI 2 CHF'')))'
condition_concept:
value: MONDO:0004979
range: string
Expand Down
4 changes: 2 additions & 2 deletions priority_variables_transform/FHS-ingest/basophil_ncnc_bld.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -51,9 +51,9 @@
populated_from: pht004802
slot_derivations:
associated_participant:
populated_from: phv00227024
populated_from: phv00227023
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227024}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00227023}) + ":" + case(({phv00227024} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00227024} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
age_at_observation:
expr: case(({phv00227024} == 1, {pht003099.phv00177946} * 365), case({phv00227024} == 7, {pht003099.phv00177936} * 365))
observation_type:
Expand Down
32 changes: 16 additions & 16 deletions priority_variables_transform/FHS-ingest/bdy_hgt.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -723,9 +723,9 @@
populated_from: pht000395
slot_derivations:
associated_participant:
populated_from: phv00056607
populated_from: phv00056635
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056607}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00056635}) + ":" + case(({phv00056607} == ''1'', ''FHS OFFSPRING SHHS EXAM 1''), ({phv00056607} == ''7'', ''FHS OMNI 1 SHHS EXAM 1'')))'
age_at_observation:
expr: '{phv00056587} * 365'
observation_type:
Expand Down Expand Up @@ -891,9 +891,9 @@
populated_from: pht005140
slot_derivations:
associated_participant:
populated_from: phv00254011
populated_from: phv00254010
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00254011}) + ":" + case(({phv00254011} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00254011} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00254010}) + ":" + case(({phv00254011} == ''1'', ''FHS OFFSPRING EXAM 9''), ({phv00254011} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
age_at_observation:
expr: case(({phv00254011} == 1, {pht003099.phv00177946} * 365), case({phv00254011} == 7, {pht003099.phv00177936} * 365))
observation_type:
Expand Down Expand Up @@ -1035,9 +1035,9 @@
populated_from: pht006026
slot_derivations:
associated_participant:
populated_from: phv00277016
populated_from: phv00277015
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00277016}) + ":" + case(({phv00277016} == ''2'', ''FHS NEW OFFSPRING SPOUSE EXAM 1''), ({phv00277016} == ''3'', ''FHS GENERATION 3 EXAM 1''), ({phv00277016} == ''72'', ''FHS OMNI 2 EXAM 1'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00277015}) + ":" + case(({phv00277016} == ''2'', ''FHS NEW OFFSPRING SPOUSE EXAM 1''), ({phv00277016} == ''3'', ''FHS GENERATION 3 EXAM 1''), ({phv00277016} == ''72'', ''FHS OMNI 2 EXAM 1'')))'
age_at_observation:
expr: '{pht003099.phv00177930} * 365'
observation_type:
Expand All @@ -1059,9 +1059,9 @@
populated_from: pht006026
slot_derivations:
associated_participant:
populated_from: phv00277016
populated_from: phv00277015
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00277016}) + ":" + case(({phv00277016} == ''2'', ''FHS NEW OFFSPRING SPOUSE EXAM 2''), ({phv00277016} == ''3'', ''FHS GENERATION 3 EXAM 2''), ({phv00277016} == ''72'', ''FHS OMNI 2 EXAM 2'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00277015}) + ":" + case(({phv00277016} == ''2'', ''FHS NEW OFFSPRING SPOUSE EXAM 2''), ({phv00277016} == ''3'', ''FHS GENERATION 3 EXAM 2''), ({phv00277016} == ''72'', ''FHS OMNI 2 EXAM 2'')))'
age_at_observation:
expr: '{pht003099.phv00177932} * 365'
observation_type:
Expand Down Expand Up @@ -1905,9 +1905,9 @@
populated_from: pht009761
slot_derivations:
associated_participant:
populated_from: phv00423869
populated_from: phv00423868
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00423869}) + ":" + case(({phv00423869} == ''1'', ''FHS OFFSPRING EXAM 1''), ({phv00423869} == ''7'', ''FHS OMNI 1 EXAM 1'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00423868}) + ":" + case(({phv00423869} == ''1'', ''FHS OFFSPRING EXAM 1''), ({phv00423869} == ''7'', ''FHS OMNI 1 EXAM 1'')))'
age_at_observation:
expr: '{pht003099.phv00177930} * 365'
observation_type:
Expand All @@ -1929,9 +1929,9 @@
populated_from: pht009761
slot_derivations:
associated_participant:
populated_from: phv00423869
populated_from: phv00423868
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00423869}) + ":" + case(({phv00423869} == ''1'', ''FHS OFFSPRING EXAM 2''), ({phv00423869} == ''7'', ''FHS OMNI 1 EXAM 2'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00423868}) + ":" + case(({phv00423869} == ''1'', ''FHS OFFSPRING EXAM 2''), ({phv00423869} == ''7'', ''FHS OMNI 1 EXAM 2'')))'
age_at_observation:
expr: '{pht003099.phv00177932} * 365'
observation_type:
Expand All @@ -1953,9 +1953,9 @@
populated_from: pht009761
slot_derivations:
associated_participant:
populated_from: phv00423869
populated_from: phv00423868
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00423869}) + ":" + case(({phv00423869} == ''1'', ''FHS OFFSPRING EXAM 3''), ({phv00423869} == ''7'', ''FHS OMNI 1 EXAM 3'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00423868}) + ":" + case(({phv00423869} == ''1'', ''FHS OFFSPRING EXAM 3''), ({phv00423869} == ''7'', ''FHS OMNI 1 EXAM 3'')))'
age_at_observation:
expr: '{pht003099.phv00177934} * 365'
observation_type:
Expand All @@ -1977,9 +1977,9 @@
populated_from: pht009761
slot_derivations:
associated_participant:
populated_from: phv00423869
populated_from: phv00423868
associated_visit:
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00423869}) + ":" + case(({phv00423869} == ''1'', ''FHS OFFSPRING EXAM 4''), ({phv00423869} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
expr: 'uuid5("https://w3id.org/bdchm/Visit", str({phv00423868}) + ":" + case(({phv00423869} == ''1'', ''FHS OFFSPRING EXAM 4''), ({phv00423869} == ''7'', ''FHS OMNI 1 EXAM 4'')))'
age_at_observation:
expr: '{pht003099.phv00177936} * 365'
observation_type:
Expand Down
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