add multiprocessing#92

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LFT18 wants to merge 99 commits intoRasmussenLab:developerfrom

Commits on Apr 18, 2024

Commits on Apr 22, 2024

:fire: clean-up duplicated src/move files (pkg was in main folder)
Henry Webel
committed

Commits on Apr 23, 2024

:sparkles: add identify_associations_multiprocess to src/move/tasks
Henry Webel
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:bug: make mutliprocessing not stale: assign # of threads for each process
Henry Webel
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Merge pull request #1 from enryH/main
LFT18
authored
Updated identify_associations_multiprocess.py
qgh533
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Update config files for small tries
qgh533
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Commits on Apr 24, 2024

Multiprocessing for analyze_latent
qgh533
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Analyze latent multiprocessing
qgh533
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Analyze latent multiprocessing
qgh533
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Commits on Apr 25, 2024

Fix bayes_k calculation
qgh533
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Commits on Apr 26, 2024

Fix analyze_latent_multiprocessing
qgh533
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Commits on May 11, 2024

Update and new functions
qgh533
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Delete files and fix multiloop
qgh533
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Commits on May 21, 2024

Clean identify_association_multiprocess.py
qgh533
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Clean analyze_latent multiprocessing.py
qgh533
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Commits on Jun 7, 2024

Update perturbations.py
LFT18
authored

Commits on Jun 10, 2024

Update perturbations.py
LFT18
authored

Commits on Jun 18, 2024

:art: format with black
Henry
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Merge branch 'main' into LFT18-main
Henry
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Merge branch 'developer' into LFT18-main
Henry
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Commits on Jun 20, 2024

:art: add trigger of actions from PR
Henry
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:art: format with black
Henry
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:fire: remove duplicated code and intermediate scripts
Henry
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Commits on Jun 21, 2024

Merge branch 'developer' into LFT18-main
Henry
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Commits on Jun 24, 2024

:bug: fix f-string formatting errors
Henry
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:bug: remove unused imports
Henry
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Commits on Jul 3, 2024

Commits on Jul 4, 2024

Commits on Jul 5, 2024

:fire: remove old schema entries, increase run time
Henry
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:zip: do no save intermediate files for single-process bayes_approach
Henry
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:fire: remove comments
Henry
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:fire: remove unused code
Henry
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:art: reorder functions
Henry
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:construction: move bayes_parallel to own module
Henry
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:construction: unify interface
Henry
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:fire: remove not-used code
Henry
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:art: start separating recurrent code into fcts
Henry
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:art: adapt to look more similar to single-core bayes factor fct
Henry
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:sparkles: add back masking of self-perturbed feat.
Henry
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Commits on Jul 8, 2024

:art: initiailize logger at the top of the module
Henry
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:sparkles: pass feature_mask to bayes_parallell
Henry
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:bug: add condition for masking
Henry
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:art: align masking strategies
Henry
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:bug: fix cont perturbation
Henry
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:bug: remove redefintion of nan_mask
Henry
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:art: only define logger once in module
Henry
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:art: align single process bayes and multiprocess bayes fct
Henry
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:art: just document in code that this cannot happen
Henry
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:zap: improve CI speed, reduce stability (-> one refit only)
Henry
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:bug: use default no. of epochs + t-test needs 4 refits
Henry
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Commits on Jul 9, 2024

:zap: do not run t-test check (for now)
Henry
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:zap: bump up bayes factor training
Henry
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:art: train both refits with 100 epochs
Henry
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:sparkles: add log2 option
Henry
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:art: document some more
Henry
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:zap: test multiprocess on continuous tutorial
Henry
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:bug: remove non-exisitng key
Henry
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:sparkles: build dataloader fct
Henry
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:bug: fix minor bug (wrongly assigned feat)
Henry
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:zap: move masking code into main fct of module
Henry
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:art: move feat_mask creation out
Henry
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:ambulance: temp. fix of CI
Henry
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:zap: do not build dataloaders for multiprocessing
Henry
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Commits on Jul 10, 2024

:construction: test t-test again, re-run pert. w/o model training
Henry
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:sparkles: add categorical pert. to multiprocessing
Henry
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:fire: remove unused code
Henry
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:art: remove unused argument
Henry
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Commits on Jul 12, 2024

:rewind: checkout developer version
Henry
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:art: move shared key to base class
Henry
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:fire: remove comments and code duplications
Henry
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:art: update type hints, remove unused import
Henry
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Commits on Aug 12, 2024

Merge branch 'developer' into main
enryH
authored