chore(oi2): pin defaults, docs

[tristan-f-r]

I was very confused by what 'corrupted data' meant in OI2. Hopefully this saves the next reader some time digging through the OmicsIntegrator2 codebase.

While we're here, we also pin the defaults using values provided by OI2, move dummy_mode documentation over to the enum instead of on the parameter class directly, and correct some summary table serialization issues.

[read-the-docs-community]

Documentation build overview

📚 spras | 🛠️ Build #31810450 | 📁 Comparing 8a7fca3 against latest (cd0cd2d)

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Show files changed (6 files in total): 📝 5 modified | ➕ 0 added | ➖ 1 deleted

File	Status
genindex.html	📝 modified
fordevs/modules.html	📝 modified
fordevs/spras.config.html	📝 modified
fordevs/spras.html	📝 modified
prms/diamond.html	➖ deleted
prms/prms.html	📝 modified

[agitter]

The updated comments make sense to me. @ntalluri can double-check too.

We have a test failure though.

[tristan-f-r]

The failed test was due to an outdated artifact. I took the opportunity to use json.dumps instead (see commit), which makes the key sorting TODO easy and drops the awkward __repr__ only present in oi1's DummyMode but not oi2.