ReproNim Skills

A collection of skills for AI coding agents tailored to ReproNim tools and neuroimaging workflows. Skills are packaged instructions that extend AI agent capabilities when working with ReproNim's ecosystem of tools.

Skills follow the Agent Skills format and are compatible with Claude Code, GitHub Copilot, Cursor, and other AI coding agents.

Available Skills

Skills are located in the skills/ directory. Each skill is a single Markdown file (e.g., skills/my-skill.md) containing structured instructions for the agent.

No skills have been added yet. See Contributing to add one.

Installation

npx skills add ReproNim/skills

Install a specific skill

npx skills add ReproNim/skills --skill <skill-name>

Install to a specific agent

npx skills add ReproNim/skills -a claude-code
npx skills add ReproNim/skills -a cursor

Purpose

This repository provides reusable, shareable AI agent skills for the ReproNim community. Skills encode domain knowledge about:

• ReproNim tools and best practices (e.g., DataLad, Neurodocker, ReproSchema)
• Neuroimaging data management and FAIR data principles
• Reproducible research workflows
• BIDS (Brain Imaging Data Structure) conventions

By packaging this knowledge as agent skills, researchers and developers get consistent, expert guidance directly inside their AI coding assistant.

Skill Structure

Each skill is a single Markdown file placed directly in the skills/ directory:

skills/
└── my-skill.md    # SKILL.md-format file describing the skill

Skill file format

---
name: repronim-my-skill
description: >
  Brief description of when and how to use this skill.
license: MIT
metadata:
  author: ReproNim
  version: 1.0.0
---

# My Skill

## When to Apply

...

## Guidelines

...

Contributing

1. Create a new Markdown file in the skills/ directory (e.g., skills/datalad-best-practices.md).
2. Follow the skill file format above.
3. Update this README to list the new skill under Available Skills.
4. Open a pull request.

License

MIT