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Remove DynamicalSystems dependency #12

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Merged
ReubenJ merged 1 commit into from
Feb 6, 2025
Merged

Remove DynamicalSystems dependency #12

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6 changes: 3 additions & 3 deletions Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ version = "0.2.0"
[deps]
AbstractTrees = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
DynamicalSystems = "61744808-ddfa-5f27-97ff-6e42cc95d634"
DynamicalSystemsBase = "6e36e845-645a-534a-86f2-f5d4aa5a06b4"
FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
HerbConstraints = "1fa96474-3206-4513-b4fa-23913f296dfc"
Expand All @@ -22,7 +22,7 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[compat]
AbstractTrees = "0.4.5"
DocStringExtensions = "0.9.3"
DynamicalSystems = "3"
DynamicalSystemsBase = "3.13.2"
FileIO = "1"
Graphs = "1.12"
HerbConstraints = "0.2.4"
Expand All @@ -32,6 +32,6 @@ HerbSearch = "0.4.1"
MLStyle = "0.4.17"
MetaGraphsNext = "0.7"
Random = "1.10"
SoleLogics = "0.12"
SoleLogics = "0.12.0"
Statistics = "1.10"
julia = "1.6"
3 changes: 0 additions & 3 deletions src/GraphDynamicalSystems.jl
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Original file line number Diff line number Diff line change
@@ -1,9 +1,6 @@
module GraphDynamicalSystems

using DocStringExtensions
using DynamicalSystems
using MetaGraphsNext
using SoleLogics


include("boolean_networks.jl")
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2 changes: 1 addition & 1 deletion src/boolean_networks.jl
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Expand Up @@ -6,7 +6,7 @@ module BooleanNetworks

using DocStringExtensions
using MetaGraphsNext: MetaGraph, add_edge!, SimpleDiGraph, nv, labels
using DynamicalSystems: ArbitrarySteppable
using DynamicalSystemsBase: ArbitrarySteppable
using SoleLogics:
Formula,
Atom,
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9 changes: 5 additions & 4 deletions src/qualitative_networks.jl
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Original file line number Diff line number Diff line change
@@ -1,12 +1,13 @@
import DynamicalSystems: get_state, set_state!
import DynamicalSystemsBase: get_state, set_state!

using AbstractTrees: Leaves
using DynamicalSystemsBase: ArbitrarySteppable
using HerbConstraints: addconstraint!, DomainRuleNode, VarNode, Ordered, Forbidden
using HerbCore: AbstractGrammar, RuleNode, get_rule
using HerbGrammar: add_rule!, rulenode2expr, @csgrammar
using HerbConstraints: addconstraint!, DomainRuleNode, VarNode, Ordered, Forbidden
using HerbSearch
using HerbSearch: rand
using MLStyle: @match
using MetaGraphsNext: MetaGraph, SimpleDiGraph, add_edge!, nv
using MetaGraphsNext: MetaGraph, SimpleDiGraph, add_edge!, nv, labels

base_qn_grammar = @csgrammar begin
Val = Val + Val
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2 changes: 1 addition & 1 deletion test/Project.toml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
[deps]
Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
DynamicalSystems = "61744808-ddfa-5f27-97ff-6e42cc95d634"
DynamicalSystemsBase = "6e36e845-645a-534a-86f2-f5d4aa5a06b4"
Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
HerbCore = "2b23ba43-8213-43cb-b5ea-38c12b45bd45"
JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
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2 changes: 1 addition & 1 deletion test/test-bn.jl
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@@ -1,5 +1,5 @@
using MetaGraphsNext: nv, MetaGraph
using DynamicalSystems: trajectory
using DynamicalSystemsBase: trajectory
using SoleLogics: cnf, AbstractSyntaxStructure, LeftmostLinearForm, ∧

@testset "Boolean Network Sampling" begin
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3 changes: 1 addition & 2 deletions test/test-qn.jl
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@@ -1,5 +1,4 @@
using DynamicalSystems
using GraphDynamicalSystems
using DynamicalSystemsBase: step!, get_state, set_state!
using Graphs: ne, nv

@testset "QN Grammar Creation" begin
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