feat: save to BMA json format

Project.toml

@@ -1,44 +1,43 @@
 name = "GraphDynamicalSystems"
 uuid = "13529e2e-ed53-56b1-bd6f-420b01fca819"
 authors = ["Reuben Gardos Reid <[email protected]>"]
-version = "0.0.5"
+version = "0.0.6"
 
 [deps]
 AbstractTrees = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
+AutoHashEquals = "15f4f7f2-30c1-5605-9d31-71845cf9641f"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 DynamicalSystemsBase = "6e36e845-645a-534a-86f2-f5d4aa5a06b4"
 Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
 HerbConstraints = "1fa96474-3206-4513-b4fa-23913f296dfc"
 HerbCore = "2b23ba43-8213-43cb-b5ea-38c12b45bd45"
 HerbGrammar = "4ef9e186-2fe5-4b24-8de7-9f7291f24af7"
 HerbSearch = "3008d8e8-f9aa-438a-92ed-26e9c7b4829f"
+JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078"
+MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 MetaGraphsNext = "fa8bd995-216d-47f1-8a91-f3b68fbeb377"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
-
-[weakdeps]
-JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
-MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-
-[extensions]
-JSONExt = ["JSON", "MacroTools"]
+StructUtils = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42"
 
 [compat]
 AbstractTrees = "0.4.5"
+AutoHashEquals = "2.2.0"
 DocStringExtensions = "0.9.3"
-DynamicalSystemsBase = "3.13.2"
+DynamicalSystemsBase = "3.10"
 Graphs = "1.12"
 HerbConstraints = "0.4"
 HerbCore = "0.3.4"
 HerbGrammar = "0.6"
 HerbSearch = "0.4.1"
-JSON = "0.21.4, 1"
+JSON = "1"
 MLStyle = "0.4.17"
 MacroTools = "0.5.16"
 MetaGraphsNext = "0.7"
 Random = "1.10"
 SciMLBase = "2.74.1"
 StaticArrays = "1.9.12"
+StructUtils = "2.5.1"
 julia = "1.10"

src/GraphDynamicalSystems.jl

@@ -17,13 +17,18 @@ export GraphDynamicalSystem,
 include("qualitative_networks.jl")
 export QualitativeNetwork,
     QN,
+    Entity,
     build_qn_grammar,
     update_functions_to_interaction_graph,
     sample_qualitative_network,
     get_domain,
     target_functions,
     interpret,
     create_qn_system,
-    default_target_function
+    default_target_function,
+    set_state!,
+    current_parameters
+
+include("io/bma.jl")
 
 end