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Atomworks warnings while running RFD3

Status: Open.

#139 In RosettaCommons/foundry;

· Alexander-the-Evil opened on Dec 27, 2025

elegant way to color pLDDT from JSON into CIF for visualization?

Status: Open.

#137 In RosettaCommons/foundry;

· mintuora opened on Dec 27, 2025

Custom ligand conformer issues

Status: Open.

#136 In RosettaCommons/foundry;

· AlvinAi-cloud opened on Dec 26, 2025

Does RF3InferenceEngine.run() support parallelism / batching for multiple AtomArray inputs?

RosettaFold3Issues related to RF3Issues related to RF3

Status: Open.

#135 In RosettaCommons/foundry;

· mintuora opened on Dec 26, 2025

Can contig and unindex coexist in the rfd3 design?

Status: Open.

#134 In RosettaCommons/foundry;

· ruichaomao opened on Dec 26, 2025

Running Error about RFD3's Symmetry examples

Status: Open.

#132 In RosettaCommons/foundry;

· zhanglin010 opened on Dec 25, 2025

Confusion regarding RFD3 inputs

Status: Open.

#131 In RosettaCommons/foundry;

· Alexander-the-Evil opened on Dec 24, 2025

MPNN output explanation

bugSomething isn't workingSomething isn't working

MPNNIssues related to any version of MPNNIssues related to any version of MPNN

Status: Open.

#130 In RosettaCommons/foundry;

· dhiraj82 opened on Dec 23, 2025

PDB mirror path not set

MPNNIssues related to any version of MPNNIssues related to any version of MPNN

Status: Open.

#128 In RosettaCommons/foundry;

· dhiraj82 opened on Dec 23, 2025

RFDiffusion3 to ProteinMPNN API via AtomArray objects fails with duplicate atom names

MPNNIssues related to any version of MPNNIssues related to any version of MPNN

RFdiffusion3Issues related to RFD3Issues related to RFD3

Status: Open.

#123 In RosettaCommons/foundry;

· kjczarne opened on Dec 19, 2025

The atom number of RF3 model doesnt match with the atom number of ProteinMPNN

MPNNIssues related to any version of MPNNIssues related to any version of MPNN

questionFurther information is requestedFurther information is requested

RFdiffusion3Issues related to RFD3Issues related to RFD3

Status: Open.

#120 In RosettaCommons/foundry;

· Forever8341 opened on Dec 19, 2025

NVIDIA GeForce RTX 5060 - Blackwell architecture

enhancementNew feature or requestNew feature or request

RFdiffusion3Issues related to RFD3Issues related to RFD3

Status: Open.

#105 In RosettaCommons/foundry;

· reynunfra opened on Dec 14, 2025