Updates on EVN mode and logging

.gitignore

@@ -5,6 +5,7 @@ __pycache__/
 
 # C extensions
 *.so
+*.csv
 
 # Distribution / packaging
 .Python
@@ -25,6 +26,8 @@ share/python-wheels/
 *.egg-info/
 .installed.cfg
 *.egg
+*.pdf
+*.txt
 MANIFEST
 
 # PyInstaller
@@ -127,3 +130,20 @@ dmypy.json
 
 # Pyre type checker
 .pyre/
+
+# By user
+main-bk*
+logs/
+../geod/jplg*
+../geod/*
+geod/jplg*
+geod/usno*
+cookies*
+ra*
+b*/
+B*/
+e*/
+r*/
+*_input.py
+*inputs.py
+./*/*

.marscode/deviceInfo.json

@@ -0,0 +1,3 @@
+{
+  "deviceId": "cd14050e957deda615fc3b6e09e8e1dbd5b54051b224d9fb189dd1c669d89615"
+}

QUICKSTART.md

@@ -0,0 +1,60 @@
+# Quick Reference / 快速参考
+
+## 运行管道 / Run Pipeline
+
+```bash
+# 基本用法 / Basic usage
+ParselTongue main.py --config configs/your_obs_input.py
+
+# 使用环境变量 / Using environment variable
+export VLBI_CONFIG=configs/your_obs_input.py
+ParselTongue main.py
+```
+
+## 创建新配置 / Create New Config
+
+```bash
+# 1. 复制模板 / Copy template
+cp configs/template_input.py configs/bz111cl_input.py
+
+# 2. 编辑参数 / Edit parameters
+vim configs/bz111cl_input.py
+
+# 3. 运行 / Run
+ParselTongue main.py --config configs/bz111cl_input.py
+```
+
+## 文件结构 / File Structure
+
+```
+configs/
+├── template_input.py      # 模板 / Template
+├── ba158l1_input.py       # 示例 / Example
+└── your_obs_input.py      # 你的配置 / Your config
+
+vlbi-pipeline/
+├── main.py                # 运行此文件 / Run this file
+└── config.py              # 自动加载配置 / Auto-loads config
+```
+
+## 常见问题 / Common Issues
+
+### 找不到配置文件 / Config not found
+```bash
+# 使用绝对路径 / Use absolute path
+ParselTongue main.py --config /full/path/to/configs/your_input.py
+
+# 或相对路径从正确的目录 / Or relative path from correct directory
+cd /path/to/vlbi-pipeline
+ParselTongue vlbi-pipeline/main.py --config configs/your_input.py
+```
+
+### 查看加载了哪个配置 / See which config is loaded
+配置文件加载时会打印路径信息
+The config file path will be printed when loading
+
+## 更多信息 / More Info
+
+- 详细文档: [configs/USAGE.md](configs/USAGE.md)
+- 模板文件: [configs/template_input.py](configs/template_input.py)
+- 示例脚本: [run_examples.sh](run_examples.sh)

README.md

@@ -2,7 +2,9 @@
 
 
 
-VLBI Data Processing Pipeline
+VLBI Data Processing Pipeline.
+
+The documents can be found [vlbi-pipeline-documents](https://vlbi-pipeline-userguide.readthedocs.io/).
 
 
 
@@ -19,9 +21,49 @@ This software depends upon the following software:
 - ParselTongue
 - Obit
 
+Find details in [usage](docs/installation/install.rst)
+
 ## Usage
 
+### Quick Start
+
+```bash
+# 1. 创建配置文件 / Create config file
+cp configs/template_input.py configs/your_obs_input.py
+
+# 2. 编辑参数 / Edit parameters
+vim configs/your_obs_input.py
+
+# 3. 运行管道 / Run pipeline
+ParselTongue main.py --config configs/your_obs_input.py
+```
+
+### Configuration Management
+
+**New in 2026**: Configuration files are now organized in the `configs/` directory for better management.
+
+**Running the pipeline:**
+
+```bash
+# Method 1: Using --config parameter (Recommended)
+ParselTongue main.py --config configs/your_obs_input.py
+
+# Method 2: Using environment variable
+export VLBI_CONFIG=configs/your_obs_input.py
+ParselTongue main.py
+
+# Method 3: Set as default (create configs/default_input.py)
+ParselTongue main.py
+```
+
+### Documentation
+
+- **Quick Start**: See [QUICKSTART.md](QUICKSTART.md) for basic usage
+- **Configuration Guide**: See [configs/USAGE.md](configs/USAGE.md) for detailed configuration instructions
+- **Template**: See [configs/template_input.py](configs/template_input.py) for all available parameters
+- **Examples**: Run `./run_examples.sh` to see usage examples
 
+Find more details in [usage](docs/usage/usage.rst)
 
 
 
@@ -44,4 +86,4 @@ Feel free to PR or suggestions! [Open an issue](https://github.com/SHAO-SKA/vlbi
 
 ## License
 
-[GPL © SHAO](LICENSE)
+[GPL © SHAO](LICENSE)

geod/manual_down_jplg.ipynb

@@ -0,0 +1,91 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "27b730f6",
+   "metadata": {},
+   "source": [
+    "## Downloading ionosphere models manually"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "46ed0ec9",
+   "metadata": {},
+   "source": [
+    "### Note:\n",
+    "The automatic downloading program did not work well, try donwload manually from:\n",
+    "ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 3,
+   "id": "25fb3631",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# First, generate the download script:\n",
+    "doy_list = ['103','108','130','138','061','060','059']\n",
+    "year = \"2025\"\n",
+    "ar=year[2:4]\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
+   "id": "efbe69ca",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "curl -u anonymous:daip@nrao.edu --ftp-ssl ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/2025/103/JPL0OPSFIN_20251030000_01D_02H_GIM.INX.gz > jplg1030.25i.gz;\n",
+      "curl -u anonymous:daip@nrao.edu --ftp-ssl ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/2025/108/JPL0OPSFIN_20251080000_01D_02H_GIM.INX.gz > jplg1080.25i.gz;\n",
+      "curl -u anonymous:daip@nrao.edu --ftp-ssl ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/2025/130/JPL0OPSFIN_20251300000_01D_02H_GIM.INX.gz > jplg1300.25i.gz;\n",
+      "curl -u anonymous:daip@nrao.edu --ftp-ssl ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/2025/138/JPL0OPSFIN_20251380000_01D_02H_GIM.INX.gz > jplg1380.25i.gz;\n",
+      "curl -u anonymous:daip@nrao.edu --ftp-ssl ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/2025/061/JPL0OPSFIN_20250610000_01D_02H_GIM.INX.gz > jplg0610.25i.gz;\n",
+      "curl -u anonymous:daip@nrao.edu --ftp-ssl ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/2025/060/JPL0OPSFIN_20250600000_01D_02H_GIM.INX.gz > jplg0600.25i.gz;\n",
+      "curl -u anonymous:daip@nrao.edu --ftp-ssl ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/2025/059/JPL0OPSFIN_20250590000_01D_02H_GIM.INX.gz > jplg0590.25i.gz;\n"
+     ]
+    }
+   ],
+   "source": [
+    "\n",
+    "for doy in doy_list:\n",
+    "    command = f\"curl -u anonymous:daip@nrao.edu --ftp-ssl ftp://gdc.cddis.eosdis.nasa.gov/gps/products/ionex/{year}/{doy}/JPL0OPSFIN_{year}{doy}0000_01D_02H_GIM.INX.gz > jplg{doy}0.{ar}i.gz;\"\n",
+    "    print(command)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6856d95b",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "base",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.2"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}