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robjmcgibbon merged 1 commit into from
Aug 11, 2025
Merged

Remove metallicity plots #302

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368 changes: 0 additions & 368 deletions colibre/auto_plotter/metallicity.yml
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Expand Up @@ -606,374 +606,6 @@ stellar_mass_gas_sf_metallicity_lom_allgals_50:
- filename: GalaxyStellarMassGasMetallicity/Scholte2024.hdf5
- filename: GalaxyStellarMassGasMetallicity/Sarkar2024.hdf5


stellar_mass_gas_nitrogen_over_total_oxygen_lom_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing total (dust + diffuse) component, LoM."
y:
quantity: "derived_quantities.gas_n_over_o_abundance_total_avglin_50_kpc"
log: false
units: "dimensionless"
start: -3
end: 0.5
x:
quantity: "apertures.mass_star_50_kpc"
units: solar_mass
start: 1e6
end: 1e12
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 1e6
units: solar_mass
end:
value: 1e12
units: solar_mass
metadata:
title: "Stellar mass - Gas Total (Dust + Diffuse) Nitrogen over Oxygen relation (log-of-mean, 50 kpc aperture, cold, dense gas only)"
caption: Shown for galaxies with cold, dense gas. No minimum metallicity is imposed. All haloes are plotted, including subhaloes. This uses total element mass fractions, meaning that it includes all metals (in dust and diffuse components). This figure shows the log-of-mean, which means it first calculates the mass weighted average of N/O for each galaxy and then calculates the log.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/HaydenPawson_2022a.hdf5

stellar_mass_gas_nitrogen_over_oxygen_lom_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing diffuse component, LoM."
y:
quantity: "derived_quantities.gas_n_over_o_abundance_avglin_50_kpc"
log: false
units: "dimensionless"
start: -3
end: 0.5
x:
quantity: "apertures.mass_star_50_kpc"
units: solar_mass
start: 1e6
end: 1e12
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 1e6
units: solar_mass
end:
value: 1e12
units: solar_mass
metadata:
title: "Stellar mass - Gas Diffuse Nitrogen over Oxygen relation (log-of-mean, 50 kpc aperture, cold, dense gas only)"
caption: Shown for galaxies with cold, dense gas. No minimum metallicity is imposed. All haloes are plotted, including subhaloes. This uses diffused element mass fractions, meaning that it does not include metals that are present in dust. This figure shows the log-of-mean, which means it first calculates the mass weighted average of N/O for each galaxy and then calculates the log.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/HaydenPawson_2022a.hdf5

stellar_mass_gas_nitrogen_over_oxygen_hifloor_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing diffuse component. High floor mask"
y:
quantity: "derived_quantities.gas_n_over_o_abundance_avglog_high_50_kpc"
log: false
units: "dimensionless"
start: -3
end: 0.5
x:
quantity: "apertures.mass_star_50_kpc"
units: solar_mass
start: 1e6
end: 1e12
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 1e6
units: solar_mass
end:
value: 1e12
units: solar_mass
metadata:
title: "Stellar mass - Gas Diffuse Nitrogen over Oxygen relation (mean-of-log, 50 kpc aperture)"
caption: Shown for galaxies with cold, dense gas. The floor value is set to 1e-3 x (N/O)sun. All haloes are plotted, including subhaloes. This uses diffused element abundances, i.e. it does not include metals that are present in dust. Note that this figure shows the mean-of-log, which means it calculates the mass weighted of log(N/O) for each galaxy.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/HaydenPawson_2022a.hdf5

stellar_mass_gas_nitrogen_over_oxygen_lofloor_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing diffuse component. Low floor mask"
y:
quantity: "derived_quantities.gas_n_over_o_abundance_avglog_low_50_kpc"
log: false
units: "dimensionless"
start: -3
end: 0.5
x:
quantity: "apertures.mass_star_50_kpc"
units: solar_mass
start: 1e6
end: 1e12
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 1e6
units: solar_mass
end:
value: 1e12
units: solar_mass
metadata:
title: "Stellar mass - Gas Diffuse Nitrogen over Oxygen relation (mean-of-log, 50 kpc aperture)"
caption: Shown for galaxies with cold, dense gas. The floor value is set to 1e-4 x (N/O)sun. All haloes are plotted, including subhaloes. These quantities do not include metals that are present in dust. Note that this figure shows the mean-of-log, which means it calculates the mass weighted of log(N/O) for each galaxy.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/HaydenPawson_2022a.hdf5

gas_metallicity_gas_nitrogen_over_total_oxygen_lom_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing total (dust + diffuse) component. LoM."
y:
quantity: "derived_quantities.gas_n_over_o_abundance_total_avglin_50_kpc"
log: false
units: "dimensionless"
start: -3
end: 0.5
x:
quantity: "derived_quantities.gas_o_abundance_total_avglin_50_kpc"
log: false
units: "dimensionless"
start: 7
end: 10
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 7
units: "dimensionless"
end:
value: 10
units: "dimensionless"
metadata:
title: "Total Gas metallicity - Total Gas Nitrogen over Oxygen relation (log-of-mean, 50 kpc aperture, Only dense gas)"
caption: Shown for galaxies with cold, dense gas. Metallicity is represented by 12 + $\log_{10}$ O/H (where $\log_{10}$ O/H is averaged between gas particles with a [O/H]=-3 floor for diffuse O) of the cold, dense gas ($T < 10^{4.5}\;{\rm K}$, $n_{\rm H} > 0.1 \; {\rm cm^{-3}}$). No minimum metallicity is imposed. All haloes are plotted, including subhaloes. This uses total gas metallicity, i.e. it also includes metals that are present in dust.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/HaydenPawson_2022b.hdf5
- filename: GalaxyStellarMassGasMetallicity/Nicholls_2017b.hdf5
- filename: GalaxyStellarMassGasMetallicity/Berg_2020.hdf5


gas_metallicity_gas_nitrogen_over_oxygen_lom_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing diffuse component. LoM."
y:
quantity: "derived_quantities.gas_n_over_o_abundance_avglin_50_kpc"
log: false
units: "dimensionless"
start: -3
end: 0.5
x:
quantity: "derived_quantities.gas_o_abundance_avglin_50_kpc"
log: false
units: "dimensionless"
start: 7
end: 10
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 7
units: "dimensionless"
end:
value: 10
units: "dimensionless"
metadata:
title: "Diffuse Gas metallicity - Diffuse Gas Nitrogen over Oxygen relation (log-of-mean, 50 kpc aperture, Only dense gas)"
caption: Shown for galaxies with cold, dense gas. Metallicity is represented by 12 + $\log_{10}$ O/H (where $\log_{10}$ O/H is averaged between gas particles with a [O/H]=-3 floor for diffuse O) of the cold, dense gas ($T < 10^{4.5}\;{\rm K}$, $n_{\rm H} > 0.1 \; {\rm cm^{-3}}$). No minimum metallicity is imposed. All haloes are plotted, including subhaloes. This uses depleted gas metallicity, i.e. it does not include metals that are present in dust.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/HaydenPawson_2022b.hdf5
- filename: GalaxyStellarMassGasMetallicity/Nicholls_2017b.hdf5
- filename: GalaxyStellarMassGasMetallicity/Berg_2020.hdf5


gas_metallicity_gas_nitrogen_over_oxygen_lofloor_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing diffuse component. LoM."
y:
quantity: "derived_quantities.gas_n_over_o_abundance_avglog_low_50_kpc"
log: false
units: "dimensionless"
start: -3
end: 0.5
x:
quantity: "derived_quantities.gas_o_abundance_avglog_low_50_kpc"
log: false
units: "dimensionless"
start: 7
end: 10
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 7
units: "dimensionless"
end:
value: 10
units: "dimensionless"
metadata:
title: "Diffuse Gas metallicity - Diffuse Gas Nitrogen over Oxygen relation (mean-of-log, 50 kpc aperture)"
caption: Only shown for galaxies with cold, dense gas. Metallicity is represented by 12 + $\log_{10}$ O/H (where $\log_{10}$ O/H is averaged between gas particles with a [O/H]=-4 floor for diffuse O) of the cold, dense gas ($T < 10^{4.5}\;{\rm K}$, $n_{\rm H} > 0.1 \; {\rm cm^{-3}}$). The floor values are set to 1e-4 x (N/O)sun and 1e-4 x (O/H)sun. All haloes are plotted, including subhaloes. This uses depleted gas metallicity, i.e. it does not include metals that are present in dust.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/HaydenPawson_2022b.hdf5
- filename: GalaxyStellarMassGasMetallicity/Nicholls_2017b.hdf5
- filename: GalaxyStellarMassGasMetallicity/Berg_2020.hdf5

gas_metallicity_gas_nitrogen_over_oxygen_hifloor_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing diffuse component. High floor mask."
y:
quantity: "derived_quantities.gas_n_over_o_abundance_avglog_high_50_kpc"
log: false
units: "dimensionless"
start: -3
end: 0.5
x:
quantity: "derived_quantities.gas_o_abundance_avglog_high_50_kpc"
log: false
units: "dimensionless"
start: 7
end: 10
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 7
units: "dimensionless"
end:
value: 10
units: "dimensionless"
metadata:
title: "Diffuse Gas metallicity - Diffuse Gas Nitrogen over Oxygen relation (mean-of-log, 50 kpc aperture)"
caption: Only shown for galaxies with cold, dense gas. Metallicity is represented by 12 + $\log_{10}$ O/H (where $\log_{10}$ O/H is averaged between gas particles with a [O/H]=-3 floor for diffuse O) of the cold, dense gas ($T < 10^{4.5}\;{\rm K}$, $n_{\rm H} > 0.1 \; {\rm cm^{-3}}$). The floor values are set to 1e-3 x (N/O)sun and 1e-3 x (O/H)sun. All haloes are plotted, including subhaloes. This uses depleted gas metallicity, i.e. it does not include metals that are present in dust.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/HaydenPawson_2022b.hdf5
- filename: GalaxyStellarMassGasMetallicity/Nicholls_2017b.hdf5
- filename: GalaxyStellarMassGasMetallicity/Berg_2020.hdf5

gas_metallicity_gas_carbon_over_oxygen_lom_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing diffuse component. LoM."
y:
quantity: "derived_quantities.gas_c_over_o_abundance_avglin_50_kpc"
log: false
units: "dimensionless"
start: -2
end: 1
x:
quantity: "derived_quantities.gas_o_abundance_avglin_50_kpc"
log: false
units: "dimensionless"
start: 7
end: 10
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 7
units: "dimensionless"
end:
value: 10
units: "dimensionless"
metadata:
title: "Diffuse Gas metallicity - Diffuse Gas Carbon over Oxygen relation (log-of-mean, 50 kpc aperture, only cold dense gas)"
caption: Only shown for galaxies with cold, dense gas. Metallicity is represented by 12 + $\log_{10}$ O/H (where $\log_{10}$ O/H is averaged between gas particles for diffuse O) of the cold, dense gas ($T < 10^{4.5}\;{\rm K}$, $n_{\rm H} > 0.1 \; {\rm cm^{-3}}$). No minimum metallicity is imposed. All haloes are plotted, including subhaloes. This uses depleted gas metallicity, i.e. it does not include metals that are present in dust.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/Nicholls_2017a.hdf5

gas_metallicity_gas_carbon_over_oxygen_total_lom_50_kpc:
type: "scatter"
legend_loc: "upper left"
selection_mask: "derived_quantities.has_cold_dense_gas_50_kpc"
comment: "All galaxies with cold dense gas, showing total (dust + diffuse). LoM."
y:
quantity: "derived_quantities.gas_c_over_o_abundance_total_avglin_50_kpc"
log: false
units: "dimensionless"
start: -2
end: 1
x:
quantity: "derived_quantities.gas_o_abundance_total_avglin_50_kpc"
log: false
units: "dimensionless"
start: 7
end: 10
median:
plot: true
log: true
adaptive: true
number_of_bins: 30
start:
value: 7
units: "dimensionless"
end:
value: 10
units: "dimensionless"
metadata:
title: "Total Gas metallicity - Total (Dust + Diffuse) Gas Carbon over Oxygen relation (log-of-mean, 50 kpc aperture, only cold dense gas)"
caption: Only shown for galaxies with cold, dense gas. Metallicity is represented by 12 + $\log_{10}$ O/H (where $\log_{10}$ O/H is averaged between gas particles for diffuse O) of the cold, dense gas ($T < 10^{4.5}\;{\rm K}$, $n_{\rm H} > 0.1 \; {\rm cm^{-3}}$). No minimum metallicity is imposed. All haloes are plotted, including subhaloes. This uses total gas metallicity, i.e. it includes metals that are present in dust.
section: Gas Metallicity
show_on_webpage: true
observational_data:
- filename: GalaxyStellarMassGasMetallicity/Nicholls_2017a.hdf5


stellar_mass_star_metallicity_50:
type: "scatter"
legend_loc: "upper left"
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