luminose_hf

Codebase for head-fixed mouse behaviour with patterned optogenetics and odour delivery.

Installation:

Make sure you have installed git. Requires MATLAB with the following add-ons found in the add-on explorer:

1. Data Acquisition Toolbox for olfactometer control
2. Signal Processing Toolbox
3. DSP System Toolbox
4. Image Processing Toolbox

Dependencies:

1. Bpod_gen2
2. DMDController for DMD control
3. Bonsai with PointGrey, Scripting.Expressions, Reactive, Dsp, Vision packages for synchronized camera acquisition.

Instructions:

1. Install all dependencies to a parent directory in your local system.
2. Clone this repository:

   cd <parent directory>
   git clone https://github.com/SainsburyWellcomeCentre/luminose.git
   

3. Add all folders and sub-folders of parent directory to MATLAB path.

Usage:

1. Edit config file in luminose_hf/luminose_config.yml with correct constants
2. Launch Bpod

   Bpod(<COM#>)
   

3. Launch desired protocol on Bpod GUI.

Notes:

1. Protocols require the Bpod Hifi module for sound and rotary encoder module for treadmill movement.