Pipeline to basecall and run epi2me workflow for methylation

Run report from Nanopore should have the above line, to run the epi2me script.
Else perform base calling

2 models are available for basecalling

Change the parameter --override_basecaller_cfg in epi2me.sh based on the choice of basecalling model

After base calling run nanopore alignment to align fastq to the reference genome

Run epi2me.sh