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| # DSL - Advanced | ||
| "model_creation/programmatic_CRN_construction.md", | ||
| "model_creation/constraint_equations.md", | ||
| "model_creation/coupled_crn_equations.md", |
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The old file is still around. Do you think it would make sense to turn it into an example of how to combine equations + events + CRN models? It is a bit more straightforward with the examples, while this new one simply goes through all options one by one.
| ``` | ||
| We note that while modelling of higher-order coupled CRN/differential equation models using the DSL is a bit convoluted (due to the requirement of re-declaring the differential outside of the DSL), this is not the case for [programmatic modelling](@ref coupled_equations_programmatic). Hence, for these models, this is instead the recommended approach. | ||
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| ## [Coupled CRN/equation models for programmatic modelling](@id coupled_equations_programmatic) |
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Right now, I start with going through how coupling work with the DSL. Then, at the end I have a separate section describing the details one needs to change when using a programmatic workflow (here and most other cases it is straightforward, except for the base syntax the two approaches are really similar).
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How to compose ODESystems with ReactionSystems will be in the compositional modelling part (or at least I think that was our plan when we discussed this a while ago, still happy to change things around)
TorkelE
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Create new doc for coupled equations