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Bump the all-julia-packages group across 3 directories with 42 updates #71

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Updates the requirements on PreallocationTools, ChunkSplitters, DelaunayTriangulation, SciMLBase, PProf, Accessors, Documenter, Cubature, NonlinearSolve, DisplayAs, DiffEqDevTools, Sundials, BenchmarkTools, Krylov, FastGaussQuadrature, Sparspak, LinearSolve, NaturalNeighbours, Literate, StableRNGs, Roots, ReferenceTests, SimpleGraphs, SteadyStateDiffEq, CairoMakie, StatsBase, LiveServer, OrdinaryDiffEq, Cthulhu, ElasticArrays, DataInterpolations, JET, DifferentialEquations, SpecialFunctions, Bessels, FiniteVolumeMethod, ExplicitImports, StructEquality, DelimitedFiles, Aqua, PolygonOps and SparseDiffTools to permit the latest version.
Updates PreallocationTools to 1.0.0

Release notes

Sourced from PreallocationTools's releases.

v1.0.0

PreallocationTools v1.0.0

Diff since v0.4.34

Breaking changes

  • v1.0 for simpler maintenance

Merged pull requests:

Closed issues:

  • Allocations when using dualcache (#31)
  • Release needed: 9 commits since v0.4.34 (#148)
Commits
  • e01d25f Merge pull request #145 from ChrisRackauckas-Claude/perf-improvements-2025122...
  • 448495c Update Project.toml
  • 21a9d3e Merge pull request #147 from ChrisRackauckas-Claude/explicit-imports-20251229...
  • aafe7da Improve explicit imports hygiene
  • 1144fd6 Merge pull request #146 from ChrisRackauckas-Claude/precompile-improvements-2...
  • 0f68024 Improve precompilation: extend workload coverage
  • cd52b04 Add allocation regression tests
  • 990bffe Merge pull request #144 from ChrisRackauckas-Claude/migrate-to-dependabot
  • 0057a35 Remove CompatHelper.yml (replaced by Dependabot)
  • c80e291 Update dependabot.yml to add Julia ecosystem support
  • Additional commits viewable in compare view

Updates ChunkSplitters to 3.1.2

Release notes

Sourced from ChunkSplitters's releases.

v3.1.2

ChunkSplitters v3.1.2

Diff since v3.1.1

https://github.com/JuliaFolds2/ChunkSplitters.jl/blob/main/CHANGELOG.md

Merged pull requests:

Closed issues:

  • What should happen if length of collection is less than n? (#58)
Changelog

Sourced from ChunkSplitters's changelog.

Version 3.1.2

  • ENHANCEMENT Return a single chunk if minsize > length(collection).
  • BUGFIX Indexing chunk iterators returns out-of-bounds error if the iterator is empty now (previously returned an empty range).

Version 3.1.1

  • BUGFIX Throw an error if minsize > length(collection). Before returned an empty collection of chunks.

Version 3.1.0

  • INFO Recover support for Julia 1.6+. All tests pass from 1.9+, and an allocation test fails in 1.6.

Version 3.0.0

  • BREAKING The new lower compat bound for Julia is 1.10. This implies that support for the old LTS 1.6 has been dropped.
  • BREAKING The old main API function chunks has been renamed to index_chunks.
  • BREAKING A new function chunks has been introduced that returns an iterator that provides chunks of elements rather than chunks of indices of a given input collection. To avoid copies, it is based on view.
  • BREAKING For performance reasons, the split keyword option now requires a Split instead of a Symbol. Concretely, :batch should be replaced by Consecutive() and :scatter should be replaced by RoundRobin().
  • BREAKING The keyword argument minchunksize has been renamed to minsize.
  • BREAKING getchunk isn't public API anymore (and has, internally, been renamed to getchunkindices). If you really need a replacement, consider using index_chunks(...)[i] instead.
  • BREAKING The old legacy API that relied on positional rather than keyword arguments has been dropped.
Commits

Updates DelaunayTriangulation to 1.6.6

Release notes

Sourced from DelaunayTriangulation's releases.

v1.6.6

DelaunayTriangulation v1.6.6

Diff since v1.6.5

Merged pull requests:

Closed issues:

  • Triangulation of regular point grids produces odd patterns (#232)
  • [BUG]: Failing to calculate polygons for a voronoi plot (#234)
Changelog

Sourced from DelaunayTriangulation's changelog.

Changelog

1.6.5

  • Clarified the counter-clockwise requirement for the clip_polygon argument in voronoi. See #230.
  • Reduced spam during package tests. @info statements are now only shown on a failed test, and are now shown in the Context output of the failed test. See #231.
  • Removed docstrings on some methods that extended Base functions for internal use only. You can still find documentation on them by going to the method location and viewing the commented-out docstring. See #231.

1.6.4

  • An error is no longer thrown for inputs with duplicate points. Instead, a warning is thrown and any duplicates are merged into the skip_points keyword argument. With this, DuplicatePointsError has been removed. To silence the new warning, use DelaunayTriangulation.toggle_warn_on_dupes!().

1.6.1

  • Fix issue with clipping Voronoi tessellation dual to a single right-angled triangle. See #207

1.6.0

  • Define reverse for AbstractParametricCurves, making it easier to reverse the orientation of a curve. See #195.
  • Fixed an issue with LineSegment not returning the exact endpoints at t=1, which can be problematic when joining boundary nodes. This has been fixed. See #195.
  • Introduced is_linear to fix issues with boundary enrichment of domains with LineSegments. In particular, LineSegments are no longer enriched. See #195.
  • orientation_markers now uses uniquetol instead of unique for the final set of markers (it already did it for the intermediate markers). See #195.
  • For large Tuples, functions like eval_fnc_at_het_tuple_two_elements are problematic and allocate more than their non-type-stable counterparts. To get around this, for Tuples of length N > 32, the non-type-stable version is used. See #195.
  • Fixed issue with use_barriers when a ghost edge is selected at random during point location. See #196.
  • Introduced the (currently internal) function get_positive_curve_indices for finding curves with positive orientation in a Triangulation. See #196.
  • is_exterior_curve, is_interior_curve, num_exterior_curves, and is_disjoint are now defined based on get_positive_curve_indices rather than get_exterior_curve_indices. See #196.
  • PrecompileTools.jl is now used. See #200.
  • Introduced the (currently internal) function get_positive_curve_indices for finding curves with positive orientation in a Triangulation. #196.
  • PointLocationHistory was not marked as public. This has been fixed. See #198.
  • Fixed an issue with missing docstrings and duplicate docstrings in the documentation. See #198.
  • copy and deepcopy are now correctly implemented for PolygonTrees and PolygonHierarchys. See #199
  • Implemented copy and deepcopy for Triangulation and VoronoiTessellation. See #201.
  • Fixed a bug with Triangulations polygon_hierarchy not being correctly aliased with the polygon_hierarchy from the BoundaryEnricher, and similarly for the boundary_edge_map. See #201.
  • Implemented == for VoronoiTessellation. See #201.

1.5.0

  • Introduced the ability to reconstruct unconstrained triangulations from an existing set of points and triangles using Triangulation(points, triangles). See #192

1.4.0

  • Updated to AdaptivePredicates.jl v1.2, now allowing caches to be passed to the predicates involving incircle and orient3. These are only useful when using the AdaptiveKernel() kernel. Outside of triangulating, these caches are not passed by default, but can be provided. The functions get_incircle_cache and get_orient3_cache can be used for this purpose on a triangulation (without a triangulation, refer to AdaptivePredicate.jl's incircleadapt_cache and orient3adapt_cache). See #185.

1.3.1

  • Fix an issue with a weighted triangulation where the lifted points' convex hull was entirely coplanar. See #184

1.3.0

This release finally introduces weighted triangulations and power diagrams, and also allows for users to provide a generic convex polygon to for clipping a Voronoi tessellation instead of only the convex hull.

  • Weighted triangulations have now been implemented, as have power diagrams. The weights are also no longer restricted to Float64 type. See #180.

... (truncated)

Commits

Updates SciMLBase to 2.131.0

Release notes

Sourced from SciMLBase's releases.

v2.131.0

SciMLBase v2.131.0

Diff since v2.130.0

Merged pull requests:

Commits
  • 92b8cfd Merge pull request #1194 from ChrisRackauckas-Claude/version-bump-20251229-14...
  • 6197750 Bump version to 2.131.0
  • d1e1555 Merge pull request #1193 from ChrisRackauckas-Claude/precompile-improvements-...
  • 21e709a Expand PrecompileTools workload for faster TTFX
  • 76ef5df Merge pull request #1190 from ChrisRackauckas-Claude/fix-moshi-downgrade-compat
  • ffb1522 Bump minimum Moshi compat to 0.3.5 to fix Downgrade CI
  • 765dfc2 Merge pull request #1189 from abhro/patch-1
  • be0b10f Fix admonition header in Array_and_Number.md
  • 0d13577 Merge pull request #1188 from SciML/as/bump-version
  • f399b70 build: bump minor version
  • Additional commits viewable in compare view

Updates PProf to 3.2.0

Release notes

Sourced from PProf's releases.

v3.2.0

PProf v3.2.0

Diff since v3.1.3

Merged pull requests:

Closed issues:

  • profile.pb.gz: malformed profile: found location with reserved id=0 (#93)
Commits

Updates Accessors to 0.1.43

Release notes

Sourced from Accessors's releases.

v0.1.43

Accessors v0.1.43

Diff since v0.1.42

Merged pull requests:

Closed issues:

  • API to query if something is a lens/optic (#50)
  • String properties not supported (#145)
  • from Setfield to Accessors (#151)
  • obj position in argument order (#154)
  • Is Elements supposed to be working with delete? (#176)
  • Type stability and constant propagation with @​set on NamedTuple (#198)
  • @delete "abc"[2:3] doesn't work (#199)
  • Other Recursive (#200)
  • Setting values of triangular matrices also sets data above/below the diagonal (#203)
  • Chained assignments (#204)
  • @modify should throw an error when optic is missing arguments (#211)
Commits
  • 4603471 avoid splatting whenever possible
  • 45c7a9a optimize getall/setall
  • 4e3d9e5 Add delete with Elements optic (#206)
  • 2bbc797 add PropertyLensRuntime, fix #145
  • 4d56a02 use ComposedFunction instead of ComposedOptic everywhere
  • 6313692 Add delete method for IndexLens on strings (fixes #199)
  • 18e9ddb remove obsolete filter from CI and fix tests on Julia 1.12 (#202)
  • bd91513 Update Project.toml
  • 133fd94 Merge pull request #196 from mlechu/fix-end-parsing
  • 226892e Make lower_index nicer
  • Additional commits viewable in compare view

Updates Documenter to 1.16.1

Release notes

Sourced from Documenter's releases.

v1.16.1

The changes are documented in the CHANGELOG.md file.

Diff since v1.16.0

Changelog

Sourced from Documenter's changelog.

Version [v1.16.1] - 2025-11-21

Fixed

  • The -g is now passed to curl when checking links, to disable globbing, which could cause undesirable behavior when checking links containing characters like for example [, {, & or ?. (#2839, #2842)
  • Fixed insufficient paragraph spacing in HTML output for @docs blocks. ([#2845, #2847])
  • Don't expand details admonition by default. ([#2846, #2847])
  • Removed superfluous vertical space at end of @docs blocks. (#2849)

Version [v1.16.0] - 2025-11-14

Added

  • Added option treat_markdown_warnings_as_error which throws an error when encountering a markdown/interpolation warning (#2792, #2751)
  • Footnotes can now be previewed by hovering over the link. (#2080)
  • The version selector now attempts to stay on the same page when switching between documentation versions. If the page doesn't exist in the target version, it falls back to the version homepage. (#2801)
  • Allow named @eval blocks: such a block shares its execution context with all other @eval, @example, @repl and @setup blocks on the same page which use the same name. (#2074, #2812)

Changed

  • Page category is removed from the search index and now everything is in section category. (#2762, #2413)
  • Changed the docstring block accordions from a custom implementation to HTML details+summary tag. (#2772, #2773)
  • Improved the search tokenizer and custom trimmer to improve search results. (#1457, #2114, #2744)
  • Improved several warning/error messages to (more accurately) report the location (filename, line range) in which the warning/error originated. (#2426, #2752, #2793, #2803, #2809)
  • Warn/error if jldoctest starts with an empty line; or lacks empty line between two REPL prompts. (#2031, #2083, #2679, #2808)
  • The forcepush=true option to deploydocs now uses --force-with-lease instead of --force. (#2817)
  • Improved the generation of anchors for admonitions in HTML output to be more stable and e.g. not change due to changes of the internal representation across different Julia versions. (#2710)

Fixed

  • Modules for @example environments are now generated by eval'ing an expression, rather than invoking the Module constructor, which is not recommended. (#2683)

  • Fix handling of expandfirst entries containing slashes as path separators on Windows. (#1725, #2804)

  • Changed the header crossref step to eagerly fail when encountering a non-unique header slug. (#2668, #2787)

    This is potentially breaking and may cause some documentation builds to fail. Those previously passed but generated incorrect cross-references. You can fix this by ensuring that you have distinct headers across your markdown pages, or by using the @id syntax to give the headers unique slugs.

  • Changed CSS for the navigation "breadcrumbs" at the top of each page to avoid an issue where code blocks in there were missing spacing around them. (#1614, #2813)

  • Commit status for pull request previews publishing in GitHub Actions for out-of-repo deployment now works correctly. (#2814, #2816)

  • Fix assertions resp. errors being raised in @example, @eval, @repl blocks that are empty or contain code with syntax errors. (#2206, #2731, #2827)

Version [v1.15.0] - 2025-10-22

Changed

  • Created a warning for when the search index size is too big (500Kib). (#2423, #2753)
  • In the HTML output, the search modal can now be navigated using up and down keys. (#2761)

Other

... (truncated)

Commits
  • 55b500f Set version to 1.16.1 (#2848)
  • 56c72d8 Guide users to use workspaces when setting up Documenter (#2830)
  • a8b1479 Removed superfluous vertical space at end of @docs blocks (#2849)
  • a397e12 Fix spacing in @docs blocks; don't expand details admonition by default (...
  • 050ce55 Pass -g option to curl in linkchecker (#2842)
  • 26d0051 Build Julia HTML manual in regression tests (#2724)
  • a9af48e Set version to 1.16.0 (#2841)
  • a0665d5 Update changelog (#2840)
  • 1aecd99 Restore cd inside @eval, and add a test for it (#2837)
  • 4b6ff9d Add syntax highlight tags to docs/src/man/other-formats.md (#2838)
  • Additional commits viewable in compare view

Updates Cubature to 1.5.1

Release notes

Sourced from Cubature's releases.

v1.5.1

Cubature v1.5.1

Diff since v1.5.0

Closed issues:

  • Error: Error building Cubature (#50)
Commits

Updates NonlinearSolve to 4.13.0

Release notes

Sourced from NonlinearSolve's releases.

v4.13.0

NonlinearSolve v4.13.0

Diff since v4.12.0

Merged pull requests:

Closed issues:

  • Add EnzymeRules overloads (#618)
  • Error when specifying trace level (#713)
  • EnsembleProblem with NonlinearProblem (#717)
  • Misdetection of Automatic Differentiation of the Solve Process (#718)
  • NonlinearProblem definition throwing UndefVarError: BVP not defined (#736)
  • verbose setting changes behavior of LU/QR switching (#739)
  • Error encountered in JFNK example from documentation (#752)
  • SCCNonlinearProblem has no field u0 in SCCNonlinearSolve 1.7 (#758)
Commits
  • 2e1e449 Re-enable downgrade tests and fix compat bounds (#762)
  • b16d753 Update Project.toml
  • dcb26a2 Bump version for recent ITP bugfix (#760)
  • e885edf Fix SCCNonlinearProblem not having u0 field (issue #758) (#759)
  • 9f462d1 Handle edge case values for abstol and span with ITP (#749)
  • 68dea21 Update Project.toml
  • 3533027 Add ChainRulesCore support for SCCNonlinearProblem (#757)
  • 517270a Update Project.toml
  • c3ae10b Use SciMLBase.set_mooncakeoriginator_if_mooncake for Mooncake AD support (#756)
  • 2e44205 Update Project.toml
  • Additional commits viewable in compare view

Updates DisplayAs to 0.1.6

Release notes

Sourced from DisplayAs's releases.

v0.1.6

DisplayAs v0.1.6

Diff since v0.1.5

Merged pull requests:

Commits

Updates DiffEqDevTools to 2.49.0

Release notes

Sourced from DiffEqDevTools's releases.

v2.49.0

DiffEqDevTools v2.49.0

Diff since v2.48.0

Merged pull requests:

  • fix typo in docstring of imaginary_stability_interval (#152) (@​ranocha)
  • Remove outdated Julia v1.8 version check (

@dependabot
Bump the all-julia-packages group across 3 directories with 42 updates
e1a50f4 
Updates the requirements on [PreallocationTools](https://github.com/SciML/PreallocationTools.jl), [ChunkSplitters](https://github.com/JuliaFolds2/ChunkSplitters.jl), [DelaunayTriangulation](https://github.com/JuliaGeometry/DelaunayTriangulation.jl), [SciMLBase](https://github.com/SciML/SciMLBase.jl), [PProf](https://github.com/JuliaPerf/PProf.jl), [Accessors](https://github.com/JuliaObjects/Accessors.jl), [Documenter](https://github.com/JuliaDocs/Documenter.jl), [Cubature](https://github.com/JuliaMath/Cubature.jl), [NonlinearSolve](https://github.com/SciML/NonlinearSolve.jl), [DisplayAs](https://github.com/tkf/DisplayAs.jl), [DiffEqDevTools](https://github.com/SciML/DiffEqDevTools.jl), [Sundials](https://github.com/SciML/Sundials.jl), [BenchmarkTools](https://github.com/JuliaCI/BenchmarkTools.jl), [Krylov](https://github.com/JuliaSmoothOptimizers/Krylov.jl), [FastGaussQuadrature](https://github.com/JuliaApproximation/FastGaussQuadrature.jl), [Sparspak](https://github.com/PetrKryslUCSD/Sparspak.jl), [LinearSolve](https://github.com/SciML/LinearSolve.jl), [NaturalNeighbours](https://github.com/DanielVandH/NaturalNeighbours.jl), [Literate](https://github.com/fredrikekre/Literate.jl), [StableRNGs](https://github.com/JuliaRandom/StableRNGs.jl), [Roots](https://github.com/JuliaMath/Roots.jl), [ReferenceTests](https://github.com/JuliaTesting/ReferenceTests.jl), [SimpleGraphs](https://github.com/scheinerman/SimpleGraphs.jl), [SteadyStateDiffEq](https://github.com/SciML/SteadyStateDiffEq.jl), [CairoMakie](https://github.com/MakieOrg/Makie.jl), [StatsBase](https://github.com/JuliaStats/StatsBase.jl), [LiveServer](https://github.com/JuliaDocs/LiveServer.jl), [OrdinaryDiffEq](https://github.com/SciML/OrdinaryDiffEq.jl), [Cthulhu](https://github.com/JuliaDebug/Cthulhu.jl), [ElasticArrays](https://github.com/JuliaArrays/ElasticArrays.jl), [DataInterpolations](https://github.com/SciML/DataInterpolations.jl), [JET](https://github.com/aviatesk/JET.jl), [DifferentialEquations](https://github.com/SciML/DifferentialEquations.jl), [SpecialFunctions](https://github.com/JuliaMath/SpecialFunctions.jl), [Bessels](https://github.com/JuliaMath/Bessels.jl), [FiniteVolumeMethod](https://github.com/SciML/FiniteVolumeMethod.jl), [ExplicitImports](https://github.com/JuliaTesting/ExplicitImports.jl), [StructEquality](https://github.com/jolin-io/StructEquality.jl), [DelimitedFiles](https://github.com/JuliaData/DelimitedFiles.jl), [Aqua](https://github.com/JuliaTesting/Aqua.jl), [PolygonOps](https://github.com/JuliaGeometry/PolygonOps.jl) and [SparseDiffTools](https://github.com/JuliaDiff/SparseDiffTools.jl) to permit the latest version.

Updates `PreallocationTools` to 1.0.0
- [Release notes](https://github.com/SciML/PreallocationTools.jl/releases)
- [Commits](SciML/PreallocationTools.jl@v0.4.0...v1.0.0)

Updates `ChunkSplitters` to 3.1.2
- [Release notes](https://github.com/JuliaFolds2/ChunkSplitters.jl/releases)
- [Changelog](https://github.com/JuliaFolds2/ChunkSplitters.jl/blob/main/CHANGELOG.md)
- [Commits](https://github.com/JuliaFolds2/ChunkSplitters.jl/commits/v3.1.2)

Updates `DelaunayTriangulation` to 1.6.6
- [Release notes](https://github.com/JuliaGeometry/DelaunayTriangulation.jl/releases)
- [Changelog](https://github.com/JuliaGeometry/DelaunayTriangulation.jl/blob/main/NEWS.md)
- [Commits](JuliaGeometry/DelaunayTriangulation.jl@v0.1.1...v1.6.6)

Updates `SciMLBase` to 2.131.0
- [Release notes](https://github.com/SciML/SciMLBase.jl/releases)
- [Commits](SciML/SciMLBase.jl@v1.0.0...v2.131.0)

Updates `PProf` to 3.2.0
- [Release notes](https://github.com/JuliaPerf/PProf.jl/releases)
- [Commits](JuliaPerf/PProf.jl@v0.1.0...v3.2.0)

Updates `Accessors` to 0.1.43
- [Release notes](https://github.com/JuliaObjects/Accessors.jl/releases)
- [Commits](JuliaObjects/Accessors.jl@v0.1.0...v0.1.43)

Updates `Documenter` to 1.16.1
- [Release notes](https://github.com/JuliaDocs/Documenter.jl/releases)
- [Changelog](https://github.com/JuliaDocs/Documenter.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaDocs/Documenter.jl@v0.1.0...v1.16.1)

Updates `Cubature` to 1.5.1
- [Release notes](https://github.com/JuliaMath/Cubature.jl/releases)
- [Commits](JuliaMath/Cubature.jl@v1.0.2...v1.5.1)

Updates `NonlinearSolve` to 4.13.0
- [Release notes](https://github.com/SciML/NonlinearSolve.jl/releases)
- [Commits](SciML/NonlinearSolve.jl@SimpleNonlinearSolve-v0.1.0...v4.13.0)

Updates `DisplayAs` to 0.1.6
- [Release notes](https://github.com/tkf/DisplayAs.jl/releases)
- [Commits](tkf/DisplayAs.jl@v0.1.0...v0.1.6)

Updates `DiffEqDevTools` to 2.49.0
- [Release notes](https://github.com/SciML/DiffEqDevTools.jl/releases)
- [Commits](SciML/DiffEqDevTools.jl@v0.0.1...v2.49.0)

Updates `Sundials` to 5.1.0
- [Release notes](https://github.com/SciML/Sundials.jl/releases)
- [Changelog](https://github.com/SciML/Sundials.jl/blob/master/NEWS.md)
- [Commits](SciML/Sundials.jl@v0.1.1...v5.1.0)

Updates `BenchmarkTools` to 1.6.3
- [Release notes](https://github.com/JuliaCI/BenchmarkTools.jl/releases)
- [Commits](JuliaCI/BenchmarkTools.jl@v0.0.1...v1.6.3)

Updates `Krylov` to 0.10.3
- [Release notes](https://github.com/JuliaSmoothOptimizers/Krylov.jl/releases)
- [Commits](JuliaSmoothOptimizers/Krylov.jl@v0.1...v0.10.3)

Updates `FastGaussQuadrature` to 1.1.0
- [Release notes](https://github.com/JuliaApproximation/FastGaussQuadrature.jl/releases)
- [Commits](https://github.com/JuliaApproximation/FastGaussQuadrature.jl/commits)

Updates `Sparspak` to 0.3.14
- [Release notes](https://github.com/PetrKryslUCSD/Sparspak.jl/releases)
- [Commits](PetrKryslUCSD/Sparspak.jl@v0.1.0...v0.3.14)

Updates `LinearSolve` to 3.55.0
- [Release notes](https://github.com/SciML/LinearSolve.jl/releases)
- [Commits](SciML/LinearSolve.jl@v0.1.0...v3.55.0)

Updates `NaturalNeighbours` to 1.3.6
- [Release notes](https://github.com/DanielVandH/NaturalNeighbours.jl/releases)
- [Commits](DanielVandH/NaturalNeighbours.jl@v1.0.0...v1.3.6)

Updates `Literate` to 2.21.0
- [Release notes](https://github.com/fredrikekre/Literate.jl/releases)
- [Changelog](https://github.com/fredrikekre/Literate.jl/blob/master/CHANGELOG.md)
- [Commits](fredrikekre/Literate.jl@v0.1.0...v2.21.0)

Updates `StableRNGs` to 1.0.4
- [Release notes](https://github.com/JuliaRandom/StableRNGs.jl/releases)
- [Commits](JuliaRandom/StableRNGs.jl@v0.1.0...v1.0.4)

Updates `Roots` to 2.2.10
- [Release notes](https://github.com/JuliaMath/Roots.jl/releases)
- [Changelog](https://github.com/JuliaMath/Roots.jl/blob/master/NEWS.md)
- [Commits](JuliaMath/Roots.jl@v0.1.1...v2.2.10)

Updates `ReferenceTests` to 0.10.6
- [Release notes](https://github.com/JuliaTesting/ReferenceTests.jl/releases)
- [Commits](https://github.com/JuliaTesting/ReferenceTests.jl/commits)

Updates `SimpleGraphs` to 0.8.7
- [Release notes](https://github.com/scheinerman/SimpleGraphs.jl/releases)
- [Commits](scheinerman/SimpleGraphs.jl@v0.1.0...v0.8.7)

Updates `SteadyStateDiffEq` to 2.8.0
- [Release notes](https://github.com/SciML/SteadyStateDiffEq.jl/releases)
- [Commits](SciML/SteadyStateDiffEq.jl@v0.0.1...v2.8.0)

Updates `CairoMakie` to 0.15.8
- [Release notes](https://github.com/MakieOrg/Makie.jl/releases)
- [Changelog](https://github.com/MakieOrg/Makie.jl/blob/master/CHANGELOG.md)
- [Commits](https://github.com/MakieOrg/Makie.jl/commits)

Updates `StatsBase` to 0.34.9
- [Release notes](https://github.com/JuliaStats/StatsBase.jl/releases)
- [Commits](JuliaStats/StatsBase.jl@0.2.3...v0.34.9)

Updates `LiveServer` to 1.5.0
- [Release notes](https://github.com/JuliaDocs/LiveServer.jl/releases)
- [Commits](JuliaDocs/LiveServer.jl@v0.1.0...v1.5.0)

Updates `OrdinaryDiffEq` to 6.105.0
- [Release notes](https://github.com/SciML/OrdinaryDiffEq.jl/releases)
- [Commits](SciML/OrdinaryDiffEq.jl@v0.0.1...v6.105.0)

Updates `Cthulhu` to 3.0.2
- [Release notes](https://github.com/JuliaDebug/Cthulhu.jl/releases)
- [Changelog](https://github.com/JuliaDebug/Cthulhu.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaDebug/Cthulhu.jl@v0.1.0...v3.0.2)

Updates `ElasticArrays` to 1.2.12
- [Release notes](https://github.com/JuliaArrays/ElasticArrays.jl/releases)
- [Commits](JuliaArrays/ElasticArrays.jl@v0.1.0...v1.2.12)

Updates `DataInterpolations` to 8.8.0
- [Release notes](https://github.com/SciML/DataInterpolations.jl/releases)
- [Changelog](https://github.com/SciML/DataInterpolations.jl/blob/master/NEWS.md)
- [Commits](SciML/DataInterpolations.jl@v0.0.1...v8.8.0)

Updates `JET` to 0.11.3
- [Release notes](https://github.com/aviatesk/JET.jl/releases)
- [Changelog](https://github.com/aviatesk/JET.jl/blob/master/CHANGELOG.md)
- [Commits](aviatesk/JET.jl@v0.0.1...v0.11.3)

Updates `DifferentialEquations` to 7.17.0
- [Release notes](https://github.com/SciML/DifferentialEquations.jl/releases)
- [Changelog](https://github.com/SciML/DifferentialEquations.jl/blob/master/NEWS.md)
- [Commits](SciML/DifferentialEquations.jl@v0.0.1...v7.17.0)

Updates `SpecialFunctions` to 2.6.1
- [Release notes](https://github.com/JuliaMath/SpecialFunctions.jl/releases)
- [Commits](JuliaMath/SpecialFunctions.jl@v0.0.1...v2.6.1)

Updates `Bessels` to 0.2.8
- [Release notes](https://github.com/JuliaMath/Bessels.jl/releases)
- [Changelog](https://github.com/JuliaMath/Bessels.jl/blob/master/NEWS.md)
- [Commits](JuliaMath/Bessels.jl@v0.1.0...v0.2.8)

Updates `FiniteVolumeMethod` to 1.2.0
- [Release notes](https://github.com/SciML/FiniteVolumeMethod.jl/releases)
- [Commits](https://github.com/SciML/FiniteVolumeMethod.jl/commits)

Updates `DelaunayTriangulation` to 1.6.6
- [Release notes](https://github.com/JuliaGeometry/DelaunayTriangulation.jl/releases)
- [Changelog](https://github.com/JuliaGeometry/DelaunayTriangulation.jl/blob/main/NEWS.md)
- [Commits](JuliaGeometry/DelaunayTriangulation.jl@v0.1.1...v1.6.6)

Updates `Accessors` to 0.1.43
- [Release notes](https://github.com/JuliaObjects/Accessors.jl/releases)
- [Commits](JuliaObjects/Accessors.jl@v0.1.0...v0.1.43)

Updates `Cubature` to 1.5.1
- [Release notes](https://github.com/JuliaMath/Cubature.jl/releases)
- [Commits](JuliaMath/Cubature.jl@v1.0.2...v1.5.1)

Updates `NonlinearSolve` to 4.13.0
- [Release notes](https://github.com/SciML/NonlinearSolve.jl/releases)
- [Commits](SciML/NonlinearSolve.jl@SimpleNonlinearSolve-v0.1.0...v4.13.0)

Updates `DisplayAs` to 0.1.6
- [Release notes](https://github.com/tkf/DisplayAs.jl/releases)
- [Commits](tkf/DisplayAs.jl@v0.1.0...v0.1.6)

Updates `BenchmarkTools` to 1.6.3
- [Release notes](https://github.com/JuliaCI/BenchmarkTools.jl/releases)
- [Commits](JuliaCI/BenchmarkTools.jl@v0.0.1...v1.6.3)

Updates `Krylov` to 0.10.3
- [Release notes](https://github.com/JuliaSmoothOptimizers/Krylov.jl/releases)
- [Commits](JuliaSmoothOptimizers/Krylov.jl@v0.1...v0.10.3)

Updates `FastGaussQuadrature` to 1.1.0
- [Release notes](https://github.com/JuliaApproximation/FastGaussQuadrature.jl/releases)
- [Commits](https://github.com/JuliaApproximation/FastGaussQuadrature.jl/commits)

Updates `LinearSolve` to 3.55.0
- [Release notes](https://github.com/SciML/LinearSolve.jl/releases)
- [Commits](SciML/LinearSolve.jl@v0.1.0...v3.55.0)

Updates `NaturalNeighbours` to 1.3.6
- [Release notes](https://github.com/DanielVandH/NaturalNeighbours.jl/releases)
- [Commits](DanielVandH/NaturalNeighbours.jl@v1.0.0...v1.3.6)

Updates `StableRNGs` to 1.0.4
- [Release notes](https://github.com/JuliaRandom/StableRNGs.jl/releases)
- [Commits](JuliaRandom/StableRNGs.jl@v0.1.0...v1.0.4)

Updates `Roots` to 2.2.10
- [Release notes](https://github.com/JuliaMath/Roots.jl/releases)
- [Changelog](https://github.com/JuliaMath/Roots.jl/blob/master/NEWS.md)
- [Commits](JuliaMath/Roots.jl@v0.1.1...v2.2.10)

Updates `ReferenceTests` to 0.10.6
- [Release notes](https://github.com/JuliaTesting/ReferenceTests.jl/releases)
- [Commits](https://github.com/JuliaTesting/ReferenceTests.jl/commits)

Updates `SimpleGraphs` to 0.8.7
- [Release notes](https://github.com/scheinerman/SimpleGraphs.jl/releases)
- [Commits](scheinerman/SimpleGraphs.jl@v0.1.0...v0.8.7)

Updates `SteadyStateDiffEq` to 2.8.0
- [Release notes](https://github.com/SciML/SteadyStateDiffEq.jl/releases)
- [Commits](SciML/SteadyStateDiffEq.jl@v0.0.1...v2.8.0)

Updates `CairoMakie` to 0.15.8
- [Release notes](https://github.com/MakieOrg/Makie.jl/releases)
- [Changelog](https://github.com/MakieOrg/Makie.jl/blob/master/CHANGELOG.md)
- [Commits](https://github.com/MakieOrg/Makie.jl/commits)

Updates `StatsBase` to 0.34.9
- [Release notes](https://github.com/JuliaStats/StatsBase.jl/releases)
- [Commits](JuliaStats/StatsBase.jl@0.2.3...v0.34.9)

Updates `OrdinaryDiffEq` to 6.105.0
- [Release notes](https://github.com/SciML/OrdinaryDiffEq.jl/releases)
- [Commits](SciML/OrdinaryDiffEq.jl@v0.0.1...v6.105.0)

Updates `Cthulhu` to 3.0.2
- [Release notes](https://github.com/JuliaDebug/Cthulhu.jl/releases)
- [Changelog](https://github.com/JuliaDebug/Cthulhu.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaDebug/Cthulhu.jl@v0.1.0...v3.0.2)

Updates `ElasticArrays` to 1.2.12
- [Release notes](https://github.com/JuliaArrays/ElasticArrays.jl/releases)
- [Commits](JuliaArrays/ElasticArrays.jl@v0.1.0...v1.2.12)

Updates `DataInterpolations` to 8.8.0
- [Release notes](https://github.com/SciML/DataInterpolations.jl/releases)
- [Changelog](https://github.com/SciML/DataInterpolations.jl/blob/master/NEWS.md)
- [Commits](SciML/DataInterpolations.jl@v0.0.1...v8.8.0)

Updates `JET` to 0.11.3
- [Release notes](https://github.com/aviatesk/JET.jl/releases)
- [Changelog](https://github.com/aviatesk/JET.jl/blob/master/CHANGELOG.md)
- [Commits](aviatesk/JET.jl@v0.0.1...v0.11.3)

Updates `SpecialFunctions` to 2.6.1
- [Release notes](https://github.com/JuliaMath/SpecialFunctions.jl/releases)
- [Commits](JuliaMath/SpecialFunctions.jl@v0.0.1...v2.6.1)

Updates `Bessels` to 0.2.8
- [Release notes](https://github.com/JuliaMath/Bessels.jl/releases)
- [Changelog](https://github.com/JuliaMath/Bessels.jl/blob/master/NEWS.md)
- [Commits](JuliaMath/Bessels.jl@v0.1.0...v0.2.8)

Updates `ExplicitImports` to 1.14.0
- [Release notes](https://github.com/JuliaTesting/ExplicitImports.jl/releases)
- [Commits](JuliaTesting/ExplicitImports.jl@v1.0.0...v1.14.0)

Updates `StructEquality` to 2.1.0
- [Release notes](https://github.com/jolin-io/StructEquality.jl/releases)
- [Changelog](https://github.com/jolin-io/StructEquality.jl/blob/main/CHANGELOG.md)
- [Commits](jolin-io/StructEquality.jl@v1.0.0...v2.1.0)

Updates `DelimitedFiles` to 1.9.1
- [Release notes](https://github.com/JuliaData/DelimitedFiles.jl/releases)
- [Commits](JuliaData/DelimitedFiles.jl@v1.9.0...v1.9.1)

Updates `Aqua` to 0.8.14
- [Release notes](https://github.com/JuliaTesting/Aqua.jl/releases)
- [Changelog](https://github.com/JuliaTesting/Aqua.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaTesting/Aqua.jl@v0.7.0...v0.8.14)

Updates `PolygonOps` to 0.1.2
- [Release notes](https://github.com/JuliaGeometry/PolygonOps.jl/releases)
- [Commits](https://github.com/JuliaGeometry/PolygonOps.jl/commits)

Updates `SparseDiffTools` to 2.26.0
- [Release notes](https://github.com/JuliaDiff/SparseDiffTools.jl/releases)
- [Commits](JuliaDiff/SparseDiffTools.jl@v0.1.0...v2.26.0)

---
updated-dependencies:
- dependency-name: PreallocationTools
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- dependency-name: ChunkSplitters
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- dependency-name: SciMLBase
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- dependency-name: PProf
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- dependency-name: Accessors
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- dependency-name: Documenter
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- dependency-name: NonlinearSolve
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- dependency-name: DisplayAs
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- dependency-name: DiffEqDevTools
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- dependency-name: Sundials
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- dependency-name: BenchmarkTools
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- dependency-name: Krylov
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- dependency-name: FastGaussQuadrature
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- dependency-name: Sparspak
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- dependency-name: LinearSolve
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- dependency-name: NaturalNeighbours
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  dependency-group: all-julia-packages
- dependency-name: Literate
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- dependency-name: StableRNGs
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  dependency-group: all-julia-packages
- dependency-name: Roots
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- dependency-name: ReferenceTests
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  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: SimpleGraphs
  dependency-version: 0.8.7
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  dependency-group: all-julia-packages
- dependency-name: SteadyStateDiffEq
  dependency-version: 2.8.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: CairoMakie
  dependency-version: 0.15.8
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  dependency-group: all-julia-packages
- dependency-name: StatsBase
  dependency-version: 0.34.9
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- dependency-name: LiveServer
  dependency-version: 1.5.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: OrdinaryDiffEq
  dependency-version: 6.105.0
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  dependency-group: all-julia-packages
- dependency-name: Cthulhu
  dependency-version: 3.0.2
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- dependency-name: ElasticArrays
  dependency-version: 1.2.12
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- dependency-name: DataInterpolations
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- dependency-name: JET
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- dependency-name: DifferentialEquations
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- dependency-name: SpecialFunctions
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- dependency-name: Bessels
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  dependency-group: all-julia-packages
- dependency-name: FiniteVolumeMethod
  dependency-version: 1.2.0
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  dependency-group: all-julia-packages
- dependency-name: DelaunayTriangulation
  dependency-version: 1.6.6
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  dependency-group: all-julia-packages
- dependency-name: Accessors
  dependency-version: 0.1.43
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  dependency-group: all-julia-packages
- dependency-name: Cubature
  dependency-version: 1.5.1
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- dependency-name: NonlinearSolve
  dependency-version: 4.13.0
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  dependency-group: all-julia-packages
- dependency-name: DisplayAs
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- dependency-name: BenchmarkTools
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- dependency-name: Krylov
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- dependency-name: FastGaussQuadrature
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- dependency-name: LinearSolve
  dependency-version: 3.55.0
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- dependency-name: NaturalNeighbours
  dependency-version: 1.3.6
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  dependency-group: all-julia-packages
- dependency-name: StableRNGs
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- dependency-name: Roots
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  dependency-group: all-julia-packages
- dependency-name: ReferenceTests
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  dependency-group: all-julia-packages
- dependency-name: SimpleGraphs
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- dependency-name: SteadyStateDiffEq
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  dependency-group: all-julia-packages
- dependency-name: CairoMakie
  dependency-version: 0.15.8
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- dependency-name: StatsBase
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- dependency-name: OrdinaryDiffEq
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- dependency-name: Cthulhu
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- dependency-name: ElasticArrays
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- dependency-name: DataInterpolations
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- dependency-name: JET
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- dependency-name: SpecialFunctions
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- dependency-name: Bessels
  dependency-version: 0.2.8
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- dependency-name: ExplicitImports
  dependency-version: 1.14.0
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- dependency-name: StructEquality
  dependency-version: 2.1.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DelimitedFiles
  dependency-version: 1.9.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Aqua
  dependency-version: 0.8.14
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: PolygonOps
  dependency-version: 0.1.2
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: SparseDiffTools
  dependency-version: 2.26.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels Jan 2, 2026
@ChrisRackauckas-Claude
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ChrisRackauckas-Claude commented Jan 7, 2026

ChunkSplitters 3.x API Breaking Change Identified

The CI failures are due to a breaking change in ChunkSplitters 3.x. The chunks function was renamed to index_chunks for index-based chunking.

Required Fix

The following changes are needed to make this PR work:

1. In Project.toml - Change compat:

-ChunkSplitters = "0.1, 1.0, 2.0, 3.1"
+ChunkSplitters = "3.1"

2. In src/FiniteVolumeMethod.jl - Update import:

-using ChunkSplitters: ChunkSplitters, chunks
+using ChunkSplitters: ChunkSplitters, index_chunks

3. In src/solve.jl - Update usages (lines 13 and 15):

-    chunked_solid_triangles = chunks(solid_triangles, nt)
+    chunked_solid_triangles = index_chunks(solid_triangles, nt)
     boundary_edges = collect(keys(get_boundary_edge_map(prob.mesh.triangulation)))
-    chunked_boundary_edges = chunks(boundary_edges, nt)
+    chunked_boundary_edges = index_chunks(boundary_edges, nt)

Notes

  • ChunkSplitters 3.x renamed chunks to index_chunks for functions returning index ranges
  • The new chunks function in 3.x returns element views instead of indices
  • This change drops support for ChunkSplitters < 3.1, which is appropriate for this major version update

cc @ChrisRackauckas

🤖 Generated with Claude Code

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@ChrisRackauckas-Claude