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niyaziacer wants to merge 10 commits into from
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OpenMAPT1Auto extension #2313

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7357dea
ENH: Add SlicerVolBrain extension
niyaziacer Dec 2, 2025
b2dbe2c
Create SlicerVolBrain.s4ext
niyaziacer Dec 2, 2025
9273a01
Move SlicerVolBrain.s4ext to correct folder for validation
niyaziacer Dec 2, 2025
c28dfa6
Resolve merge conflict using correct SlicerVolBrain.s4ext content
niyaziacer Dec 2, 2025
f707599
Remove duplicate 'enabled 1' line
niyaziacer Dec 2, 2025
4c7749c
Merge branch 'Slicer:main' into main
niyaziacer Dec 4, 2025
f36e5b3
Merge remote-tracking branch 'upstream/main'
niyaziacer Dec 23, 2025
57ef886
Update volbrain: use main branch instead of hardcoded hash
niyaziacer Dec 23, 2025
9e90668
Merge remote-tracking branch 'upstream/main'
niyaziacer Jan 20, 2026
5958a58
Add OpenMAPT1Auto.json for extension catalog entry
niyaziacer Feb 3, 2026
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7 changes: 7 additions & 0 deletions OpenMAPT1Auto.json
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Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
{
"$schema": "https://raw.githubusercontent.com/Slicer/Slicer/main/Schemas/slicer-extension-catalog-entry-schema-v1.0.1.json#",
"category": "Segmentation",
"scm_url": "https://github.com/niyaziacer/SlicerOpenMAPT1Auto",
"scm_revision": "master",
"tier": 1
}
22 changes: 22 additions & 0 deletions SlicerVolBrain.s4ext
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Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
scm git
scmurl https://github.com/niyaziacer/SlicerVolBrain.git
scmrevision main

depends NA

build_subdirectory .

homepage https://github.com/niyaziacer/SlicerVolBrain

contributors Nimet Iyazi Acer (Gaziantep University)

category Quantification

status stable

description 3D Slicer extension for comprehensive brain structure volume calculation and 3D visualization from volBrain segmentation outputs. Supports 108+ cortical regions, tissue classification, lobes, and macrostructures.

screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png

enabled 1

21 changes: 21 additions & 0 deletions SlicerVolBrain/SlicerVolBrain.s4ext
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@@ -0,0 +1,21 @@
scm git
scmurl https://github.com/niyaziacer/SlicerVolBrain.git
scmrevision main

depends NA

build_subdirectory .

homepage https://github.com/niyaziacer/SlicerVolBrain

contributors Nimet Iyazi Acer (Gaziantep University)

category Quantification

status stable

description 3D Slicer extension for comprehensive brain structure volume calculation and 3D visualization from volBrain segmentation outputs. Supports 108+ cortical regions, tissue classification, lobes, and macrostructures.

screenshoturls https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/interface.png https://raw.githubusercontent.com/niyaziacer/SlicerVolBrain/main/Screenshots/3d_visualization.png

enabled 1
1 change: 1 addition & 0 deletions volbrain.json
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Original file line number Diff line number Diff line change
Expand Up @@ -5,3 +5,4 @@
"scm_revision": "main",
"scm_type": "git"
}

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