Linker length#92

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AngelikaH123 wants to merge 59 commits intomasterfrom

Commits on Mar 9, 2023

all the stuff that is maybe broken.
AngelikaH123
committed

Commits on Mar 10, 2023

Added variable linker length option to polymer object. Still have recursion error.
AngelikaH123
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Commits on Mar 17, 2023

Revert "Added variable linker length option to polymer object. Still have recursion error."
AngelikaH123
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Commits on Mar 24, 2023

Commits on Apr 21, 2023

Commits on Apr 24, 2023

Commits on May 22, 2023

Resolved issue with SSTWLC argument numbers
AngelikaH123
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Commits on May 24, 2023

Running simulation with twist added
AngelikaH123
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Commits on Jul 14, 2023

Removed unnecessary comparisons with sample polymer inital configuration
AngelikaH123
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Commits on Jul 17, 2023

Testing github on sherlock
Angelika Genya Hirsch
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Commits on Jul 19, 2023

Added a file for submitting jobs to sherlock
Angelika Genya Hirsch
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Commits on Jul 20, 2023

More descriptive figure names.
AngelikaH123
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Commits on Aug 1, 2023

Added file to submit job to sherlock.
Angelika Genya Hirsch
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Commits on Aug 4, 2023

Added file for analyzing orienation correlations along chain
AngelikaH123
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Commits on Aug 7, 2023

Turned on move acceptance rate tracking.
AngelikaH123
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Commits on Aug 29, 2023

Added temperature variability and fixed indexing bug
AngelikaH123
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Commits on Sep 6, 2023

first iteration of temperature and twist persistance length simulated annealing
AngelikaH123
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Commits on Sep 8, 2023

modified temperature and twist modulus scheduling
AngelikaH123
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Commits on Sep 13, 2023

adjusting job submission script
Angelika Genya Hirsch
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preparing to run simulation with linear modulation of twist persistance length
AngelikaH123
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Commits on Sep 14, 2023

modified output path to scratch
AngelikaH123
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Commits on Sep 18, 2023

changing filepath
AngelikaH123
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Commits on Oct 3, 2023

Changed sbatch script to route the outputs to scratch
Angelika Genya Hirsch
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Merge branch 'linker_length' of github.com:SpakowitzLab/chromo into linker_length
AngelikaH123
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added new twist scheduling options
Angelika Genya Hirsch
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Commits on Oct 4, 2023

Commits on Oct 11, 2023

Combining previous commits
Angelika Genya Hirsch
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integrating changes from remote repo
AngelikaH123
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added omega_0 twist
AngelikaH123
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adjust default twist
AngelikaH123
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Commits on Oct 17, 2023

Added command line arguments for improved sherlock job submission efficiency
AngelikaH123
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Fixed command line argument bug
Angelika Genya Hirsch
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Commits on Oct 21, 2023

Added automation of plot downloads from sherlock
AngelikaH123
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Added automation of generating plots
Angelika Genya Hirsch
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Merge branch 'linker_length' of github.com:SpakowitzLab/chromo into linker_length
Angelika Genya Hirsch
committed

Commits on Oct 25, 2023

Commits on Oct 31, 2023

added tangent-tanget correlation analysis
AngelikaH123
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Commits on Nov 1, 2023

added bead position analysis file
AngelikaH123
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Commits on Jan 2, 2024

potentially fixed indexing bug
AngelikaH123
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