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Remove cupy prints from pyks #64

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Remove cupy prints from pyks #64

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6 changes: 3 additions & 3 deletions pykilosort/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM nvidia/cuda:10.0-base-ubuntu18.04
FROM nvidia/cuda:11.0.3-base-ubuntu18.04

LABEL maintainer="Alessio Buccino <[email protected]>"

Expand Down Expand Up @@ -30,8 +30,8 @@ RUN echo ". $CONDA_DIR/etc/profile.d/conda.sh" >> /root/.profile
# make conda activate command available from /bin/bash --interactive shells
RUN conda init bash

# Install IBL python port of pykilosort
RUN git clone -b 1.4.3 https://github.com/int-brain-lab/pykilosort.git /src/pykilosort
# Install IBL python port of pykilosort - using #16 PR to remove prints from cupy
RUN git clone -b remove_prints https://github.com/alejoe91/pykilosort.git /src/pykilosort
WORKDIR /src/pykilosort

# modify env file so that env extends on base
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2 changes: 1 addition & 1 deletion pykilosort/build.sh
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@@ -1,3 +1,3 @@
#!/bin/bash

docker build -t spikeinterface/pykilosort-base:latest -t spikeinterface/pykilosort-base:1.4.3 .
docker build -t spikeinterface/pykilosort-base:latest -t spikeinterface/pykilosort-base:1.4.3.1 .